Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G436000.1 | Wheat | nucleus | 37.44 | 76.0 |
| EES12791 | Sorghum | nucleus | 76.85 | 57.56 |
| Zm00001d026245_P001 | Maize | nucleus | 74.38 | 56.77 |
| Zm00001d002424_P002 | Maize | nucleus | 74.38 | 55.31 |
| TraesCS2B01G457200.1 | Wheat | nucleus | 69.46 | 52.42 |
| TraesCS2D01G433900.1 | Wheat | nucleus | 69.46 | 51.65 |
| GSMUA_AchrUn_... | Banana | nucleus | 55.17 | 50.91 |
| HORVU2Hr1G101600.2 | Barley | nucleus | 66.01 | 49.81 |
| KRH76406 | Soybean | nucleus | 56.16 | 37.01 |
| VIT_02s0087g00140.t01 | Wine grape | nucleus | 56.16 | 35.96 |
| GSMUA_Achr7P04840_001 | Banana | nucleus | 48.77 | 32.57 |
| PGSC0003DMT400011408 | Potato | nucleus | 42.86 | 27.19 |
| Solyc08g005900.2.1 | Tomato | nucleus | 41.87 | 26.07 |
| Os05t0128000-00 | Rice | nucleus | 29.06 | 17.72 |
Protein Annotations
| EnsemblPlants:Os04t0602300-01 | EnsemblPlantsGene:Os04g0602300 | GO:GO:0000981 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006357 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | ncoils:Coil | PANTHER:PTHR45227 | ProteinID:BAF15685.1 |
| ProteinID:BAS90851.1 | SEG:seg | UniParc:UPI0000DD9256 | UniProt:Q0JAF2 | MapMan:15.5.20 | : |
Description
Similar to B0403H10-OSIGBa0105A11.17 protein. (Os04t0602300-01)
Coordinates
chr4:-:30393180..30395406
Molecular Weight (calculated)
24197.4 Da
IEP (calculated)
6.001
GRAVY (calculated)
-1.283
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: VNKSFPIHPF HQGKETSDPE NGRQCPFFDE LHAVFTERAR TMQQQLLESE SGPSVKKKLK RPSGDLSSED SDDEEDGSGD SGDEKPIRSR KRKIADKRQQ
101: SQRMAEKSRT SISSIHELLQ DFLVQQQRMD IQWHEMMERR SQERIVFEQE WRQSMQKLEQ ERLMLEHTWM EREEQRRMRE EARAEKRDAL LTTLLNKVLQ
201: EDL
101: SQRMAEKSRT SISSIHELLQ DFLVQQQRMD IQWHEMMERR SQERIVFEQE WRQSMQKLEQ ERLMLEHTWM EREEQRRMRE EARAEKRDAL LTTLLNKVLQ
201: EDL
001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL
Arabidopsis Description
GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.