Factsheet for VIT_02s0087g00140.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G436000.1	Wheat	nucleus	20.5	65.0
GSMUA_AchrUn_...	Banana	nucleus	43.53	62.73
KRH76406	Soybean	nucleus	56.47	58.12
TraesCS2B01G457200.1	Wheat	nucleus	47.95	56.51
Os04t0602300-01	Rice	cytosol, nucleus	35.96	56.16
TraesCS2D01G433900.1	Wheat	nucleus	47.63	55.31
HORVU2Hr1G101600.2	Barley	nucleus	45.74	53.9
EES12791	Sorghum	nucleus	46.06	53.87
GSMUA_Achr7P04840_001	Banana	nucleus	51.1	53.29
Zm00001d026245_P001	Maize	nucleus	43.22	51.5
Zm00001d002424_P002	Maize	nucleus	43.85	50.92
Solyc08g005900.2.1	Tomato	nucleus	48.9	47.55
PGSC0003DMT400011408	Potato	nucleus	47.32	46.88
VIT_08s0105g00400.t01	Wine grape	nucleus	38.49	44.04
VIT_17s0000g10420.t01	Wine grape	nucleus	17.67	16.37
VIT_01s0010g02420.t01	Wine grape	nucleus	17.35	14.86
VIT_14s0171g00450.t01	Wine grape	nucleus	16.72	14.02

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100259610	wikigene:100259610	MapMan:15.5.20	ProteinID:CCB52251	ProteinID:CCB52251.1
ncoils:Coil	UniProt:F6HJ54	EMBL:FN595769	GO:GO:0000981	GO:GO:0003674	GO:GO:0003700
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR017877	EntrezGene:LOC100259610
wikigene:LOC100259610	InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45227	InterPro:SANT/Myb
SMART:SM00717	UniParc:UPI00021098C9	ArrayExpress:VIT_02s0087g00140	EnsemblPlantsGene:VIT_02s0087g00140	EnsemblPlants:VIT_02s0087g00140.t01	RefSeq:XP_002266735
RefSeq:XP_002266735.2	RefSeq:XP_010644782.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:+:17306171..17309217

Molecular Weight (calculated)

37199.6 Da

IEP (calculated)

6.411

GRAVY (calculated)

-1.264

Length

317 amino acids

Sequence
(BLAST)

001: MLGEQQGEGE EVETTLGGGG GGSGGGFAAN MNINMNIGNL KMKEERVPQW SHQETKDFIA IRAELERDFA LTKRNKTLWE AVASKMKEMG YKRTPDQCKC
101: KWKNLVNRYK GKETSDPENG RQCPFFEELH AIFEERAKNM QRRLLESEAG SMQSRKRARR ISAGDHSSDE FSEDEDDDED DSEEERLPRS SNPRKRKAER
201: ERPLRATASD VKSVRPPNAA NISSASSIPE MLKEFFQQQQ RMEMQWREAM ERRAQERQMF EQEWRQSMEK LERERLMVEQ AWREREEQRR AREESRAEKR
301: DVLLTTLLNK LIHENHL

Best Arabidopsis Sequence Match ( AT2G38250.1 )
(BLAST)

001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL

Arabidopsis Description

GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.