Factsheet for VIT_08s0105g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00261	Soybean	nucleus	68.59	65.07
KRH65719	Soybean	cytosol	63.18	64.1
KRH49393	Soybean	nucleus	66.79	63.57
KRH75965	Soybean	nucleus	60.65	61.76
Solyc09g005560.2.1	Tomato	nucleus	63.54	60.07
PGSC0003DMT400077751	Potato	nucleus	64.26	59.73
AT2G38250.1	Thale cress	nucleus	53.07	50.87
Bra005127.1-P	Field mustard	nucleus	51.99	49.32
Bra005688.1-P	Field mustard	nucleus	50.18	48.6
CDX74901	Canola	nucleus	51.62	48.47
CDX91438	Canola	nucleus	50.54	47.95
CDY14474	Canola	nucleus	50.18	47.6
CDY07745	Canola	nucleus	50.18	47.28
Bra000046.1-P	Field mustard	nucleus	50.18	47.28
Bra028899.1-P	Field mustard	nucleus	39.71	44.9
CDY11203	Canola	nucleus	50.9	44.2
CDX80775	Canola	nucleus	49.82	43.26
CDY10496	Canola	nucleus	49.46	43.22
AT5G01380.1	Thale cress	nucleus	50.18	43.03
CDY04841	Canola	nucleus	47.65	42.58
VIT_02s0087g00140.t01	Wine grape	nucleus	44.04	38.49
GSMUA_Achr8P21100_001	Banana	nucleus	25.27	34.31
TraesCS1D01G072600.1	Wheat	nucleus	37.91	32.92
Os05t0128000-00	Rice	nucleus	38.27	31.83
TraesCS1B01G088500.1	Wheat	nucleus	36.1	31.06
Zm00001d035457_P001	Maize	nucleus	36.46	30.15
HORVU1Hr1G014950.2	Barley	mitochondrion	37.55	29.46
OQU77323	Sorghum	nucleus	37.18	24.18
VIT_17s0000g10420.t01	Wine grape	nucleus	17.33	14.04
VIT_14s0171g00450.t01	Wine grape	nucleus	18.41	13.49
VIT_01s0010g02420.t01	Wine grape	nucleus	17.33	12.97

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100259062	wikigene:100259062	MapMan:15.5.20	ProteinID:CCB47922	ProteinID:CCB47922.1
UniProt:F6H6T6	EMBL:FN595245	GO:GO:0000981	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR017877	EntrezGene:LOC100259062	wikigene:LOC100259062	InterPro:Myb-like_dom
PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45378	InterPro:Trihelix_TF_GT3	UniParc:UPI0002108D07	ArrayExpress:VIT_08s0105g00400
EnsemblPlantsGene:VIT_08s0105g00400	EnsemblPlants:VIT_08s0105g00400.t01	RefSeq:XP_002264016	RefSeq:XP_002264016.1	SEG:seg	:

Description

No Description!

Coordinates

chr8:+:7652605..7656300

Molecular Weight (calculated)

33059.3 Da

IEP (calculated)

6.356

GRAVY (calculated)

-1.109

Length

277 amino acids

Sequence
(BLAST)

001: MEGHHISVHI DTGDRFPQWS IQETKEFLMI RAELDRTFME TKRNKLLWEV IANKMKEKGY NRSADQCKCK WKNLVTRYKG CETMEPEAMR QQFPFYNELQ
101: AIFTARMQRM LWIEAEGGAK KKGVQLSSED EDENEESEGE KGSSKKKKKG KTSVNVGGSS SGGSFNLKEV LEDFMKQQVQ MEVQWREVFE EREKERRAKE
201: MEWRQTMEAL ENERIMMDRR WREREEQRRM REDARSERRD ALITALLNKL RREEISSGEE EALRDSMGMF SFEWGYV

Best Arabidopsis Sequence Match ( AT2G38250.1 )
(BLAST)

001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL

Arabidopsis Description

GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.