CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005127.1-P	Field mustard	nucleus	94.86	94.86
CDX74901	Canola	nucleus	94.18	93.22
CDY14474	Canola	nucleus	84.93	84.93
CDY07745	Canola	nucleus	82.53	81.97
AT2G38250.1	Thale cress	nucleus	78.08	78.89
KRH65719	Soybean	cytosol	47.95	51.28
KRH75965	Soybean	nucleus	47.6	51.1
VIT_08s0105g00400.t01	Wine grape	nucleus	47.95	50.54
KRH00261	Soybean	nucleus	50.0	50.0
PGSC0003DMT400077751	Potato	nucleus	50.68	49.66
KRH49393	Soybean	nucleus	49.32	49.48
Solyc09g005560.2.1	Tomato	nucleus	48.97	48.81
CDY11203	Canola	nucleus	46.92	42.95
CDX80775	Canola	nucleus	46.23	42.32
CDY10496	Canola	nucleus	44.86	41.32
CDY04841	Canola	nucleus	42.81	40.32
GSMUA_Achr8P21100_001	Banana	nucleus	26.03	37.25
TraesCS1D01G072600.1	Wheat	nucleus	37.67	34.48
TraesCS1B01G088500.1	Wheat	nucleus	36.99	33.54
Os05t0128000-00	Rice	nucleus	35.96	31.53
Zm00001d035457_P001	Maize	nucleus	35.27	30.75
HORVU1Hr1G014950.2	Barley	mitochondrion	36.64	30.31
OQU77323	Sorghum	nucleus	35.96	24.65
CDX99735	Canola	nucleus	22.6	16.54
CDY40984	Canola	nucleus	21.92	16.29
CDX98101	Canola	nucleus	20.55	15.04
CDY20323	Canola	cytosol	4.45	14.94
CDY26652	Canola	cytosol	19.86	14.83
CDY30031	Canola	nucleus	20.21	14.79
CDY16091	Canola	nucleus	19.86	14.39
CDX97872	Canola	cytosol	3.77	12.64

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	GO:A0A078DW33	EnsemblPlants:CDX91438	ProteinID:CDX91438	ProteinID:CDX91438.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00152759001
InterPro:IPR017877	InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45378	InterPro:SANT/Myb
SMART:SM00717	InterPro:Trihelix_TF_GT3	UniParc:UPI0004EB5431	SEG:seg	:	:

Description

BnaC04g07120D

Coordinates

chrLK031867:+:930565..931980

Molecular Weight (calculated)

34826.9 Da

IEP (calculated)

7.025

GRAVY (calculated)

-1.305

Length

292 amino acids

Sequence
(BLAST)

001: MDQHQLHQLH YLNKHHHQLH PQSQTPELAS PATGDRFPQW SVEETKELIA IRGELDQTFM ETKRNKLLWE DVSNKMRNKS FLRSPEQCKC KWKNLVTRFK
101: GCETMDEEIA KQQFPFYDDM HIIFASRMQR MIWAESEGGG GTSGATRKRS QSEQFSSDEE EENVNEELVD ISNEPKTQNP KKNIAKKRKG GISNSSGGAN
201: NSVREVLDEF MRHQMRMENE WRERWEAREK ERAEKEEEWR RKMEELEKDR MAMERMWRDR EEQRRSREDL RAEKRDSLIN ALLAKLTRDG SL

Best Arabidopsis Sequence Match ( AT2G38250.1 )
(BLAST)

001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL

Arabidopsis Description

GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.