CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07745	Canola	nucleus	92.12	91.5
CDX91438	Canola	nucleus	84.93	84.93
CDX74901	Canola	nucleus	84.93	84.07
AT2G38250.1	Thale cress	nucleus	78.77	79.58
KRH75965	Soybean	nucleus	47.95	51.47
KRH65719	Soybean	cytosol	47.95	51.28
KRH00261	Soybean	nucleus	51.03	51.03
VIT_08s0105g00400.t01	Wine grape	nucleus	47.6	50.18
KRH49393	Soybean	nucleus	50.0	50.17
PGSC0003DMT400077751	Potato	nucleus	50.68	49.66
Solyc09g005560.2.1	Tomato	nucleus	49.32	49.15
CDY11203	Canola	nucleus	48.29	44.2
CDX80775	Canola	nucleus	47.26	43.26
CDY10496	Canola	nucleus	46.58	42.9
CDY04841	Canola	nucleus	44.52	41.94
GSMUA_Achr8P21100_001	Banana	nucleus	24.66	35.29
TraesCS1D01G072600.1	Wheat	nucleus	37.67	34.48
TraesCS1B01G088500.1	Wheat	nucleus	36.99	33.54
Os05t0128000-00	Rice	nucleus	36.99	32.43
Zm00001d035457_P001	Maize	nucleus	36.3	31.64
HORVU1Hr1G014950.2	Barley	mitochondrion	36.3	30.03
OQU77323	Sorghum	nucleus	37.67	25.82
CDY40984	Canola	nucleus	22.6	16.79
CDX99735	Canola	nucleus	22.6	16.54
CDY26652	Canola	cytosol	20.21	15.09
CDY16091	Canola	nucleus	20.21	14.64
CDY30031	Canola	nucleus	19.86	14.54
CDX98101	Canola	nucleus	19.52	14.29
CDY20323	Canola	cytosol	4.11	13.79
CDX97872	Canola	cytosol	3.77	12.64

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	GO:A0A078FNK2	UniProt:A0A078FNK2	EnsemblPlants:CDY14474	ProteinID:CDY14474
ProteinID:CDY14474.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00079157001	InterPro:IPR017877	InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45378
InterPro:SANT/Myb	SMART:SM00717	InterPro:Trihelix_TF_GT3	UniParc:UPI0004EB9394	SEG:seg	:

Description

BnaC03g21210DBnaC03g21210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNK2]

Coordinates

chrLK032043:-:549826..550963

Molecular Weight (calculated)

34581.7 Da

IEP (calculated)

8.116

GRAVY (calculated)

-1.188

Length

292 amino acids

Sequence
(BLAST)

001: MDGRQLHHLQ YLNKHNHHVH PQSQTPEIAS PATVAAGDRF PQWSLEETKE LIAIRGELDQ TFMETKRNKL LWEVVSNKMR VKSFLRSPEQ CKCKWKNLVT
101: RFKGCETTDA ESARQQFPFY DDMEIIFTSR MQRMIWVESE GGGGGASGTT RKRSHSEQFS SDEEEENVNE ELVDISNDPK ILNPKKNIVK KRKGGISNSN
201: ASNSVREVLD EFMRHQMRME NGWRERWEAR EKERAEREEE WRGKMEEIEK ERVKMERMWR DREDQRRSRE ETRAEKRDSL INALLAKLTR DG

Best Arabidopsis Sequence Match ( AT2G38250.1 )
(BLAST)

001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL

Arabidopsis Description

GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.