CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11203	Canola	nucleus	95.3	95.3
CDY10496	Canola	nucleus	71.47	71.92
CDY04841	Canola	nucleus	65.83	67.74
AT5G01380.1	Thale cress	nucleus	66.46	65.63
KRH75965	Soybean	nucleus	43.57	51.1
KRH65719	Soybean	cytosol	43.57	50.92
PGSC0003DMT400077751	Potato	nucleus	47.02	50.34
VIT_08s0105g00400.t01	Wine grape	nucleus	43.26	49.82
Solyc09g005560.2.1	Tomato	nucleus	44.83	48.81
KRH00261	Soybean	nucleus	44.2	48.29
KRH49393	Soybean	nucleus	43.89	48.11
CDY07745	Canola	nucleus	44.2	47.96
CDY14474	Canola	nucleus	43.26	47.26
CDX74901	Canola	nucleus	43.57	47.12
CDX91438	Canola	nucleus	42.32	46.23
GSMUA_Achr8P21100_001	Banana	nucleus	21.94	34.31
TraesCS1D01G072600.1	Wheat	nucleus	33.86	33.86
TraesCS1B01G088500.1	Wheat	nucleus	33.54	33.23
Os05t0128000-00	Rice	nucleus	31.97	30.63
Zm00001d035457_P001	Maize	nucleus	31.97	30.45
HORVU1Hr1G014950.2	Barley	mitochondrion	32.6	29.46
OQU77323	Sorghum	nucleus	32.92	24.65
CDY20323	Canola	cytosol	4.7	17.24
CDY16091	Canola	nucleus	17.87	14.14
CDY26652	Canola	cytosol	17.24	14.07
CDX97872	Canola	cytosol	3.76	13.79
CDY30031	Canola	nucleus	17.24	13.78
CDX98101	Canola	nucleus	17.24	13.78
CDX99735	Canola	nucleus	16.93	13.53
CDY40984	Canola	nucleus	16.61	13.49

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	GO:A0A078CVB9	EnsemblPlants:CDX80775	ProteinID:CDX80775	ProteinID:CDX80775.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSBRNA2T00134148001
InterPro:IPR017877	InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45378	InterPro:Trihelix_TF_GT3
UniParc:UPI0004EC3639	SEG:seg	:	:	:	:

Description

BnaC03g00290D

Coordinates

chrLK031823:+:152410..154125

Molecular Weight (calculated)

37769.0 Da

IEP (calculated)

5.917

GRAVY (calculated)

-1.216

Length

319 amino acids

Sequence
(BLAST)

001: MDRRNPFHHH DHELYHLIQQ QQLPLPPQST TAAMDSSGGG GERIPQWSIE ETKELLGIRE DLDQTFMETK RNKLLWEVVA AKMADKGFAR SAEQCKSKWK
101: NLVTRYKACE TTEPEAIRQQ FPFYSEIQSI FTARMQRNLW SEATEGSTSS KRKHHQFSSD EEEEDQVEEP NQDINEELLS FIETDKKKAE VITTSTSTDP
201: RKRVKKGKGI FTGSTKAETA GSTFKEILED FLRQTVKMEK EWIDAWEMKE REREKRENEW RRRMADLEEE RAAAEKRWME REDERRLREE ARGRKRDTLI
301: DALLNKLNRD HNDDHYQGF

Best Arabidopsis Sequence Match ( AT5G01380.1 )
(BLAST)

001: MDRRNPFQHH HHHHQLHHHL IQQQQLPPPP LSTTATMDPG GGGGGGERIP QWSIEETKEL LAIREELDQT FMETKRNKLL WEVVAAKMAD KGFVRSAEQC
101: KSKWKNLVTR YKACETTEPD AIRQQFPFYN EIQSIFEARM QRMLWSEATE PSTSSKRKHH QFSSDDEEEE VDEPNQDINE ELLSLVETQK RETEVITTST
201: STNPRKRAKK GKGVASGTKA ETAGNTLKDI LEEFMRQTVK MEKEWRDAWE MKEIEREKRE KEWRRRMAEL EEERAATERR WMEREEERRL REEARAQKRD
301: SLIDALLNRL NRDHNDDHHN QGF

Arabidopsis Description

GT-3ATrihelix transcription factor GT-3a [Source:UniProtKB/Swiss-Prot;Acc:Q9SDW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.