Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10496 | Canola | nucleus | 72.45 | 73.82 |
| Bra005688.1-P | Field mustard | nucleus | 62.23 | 70.28 |
| CDY11203 | Canola | nucleus | 66.25 | 67.08 |
| CDX80775 | Canola | nucleus | 65.63 | 66.46 |
| CDY04841 | Canola | nucleus | 63.78 | 66.45 |
| Bra028899.1-P | Field mustard | nucleus | 46.44 | 61.22 |
| KRH75965 | Soybean | nucleus | 44.58 | 52.94 |
| KRH49393 | Soybean | nucleus | 46.75 | 51.89 |
| KRH65719 | Soybean | cytosol | 43.34 | 51.28 |
| AT2G38250.1 | Thale cress | nucleus | 45.2 | 50.52 |
| VIT_08s0105g00400.t01 | Wine grape | nucleus | 43.03 | 50.18 |
| Solyc09g005560.2.1 | Tomato | nucleus | 44.89 | 49.49 |
| KRH00261 | Soybean | nucleus | 44.27 | 48.97 |
| PGSC0003DMT400077751 | Potato | nucleus | 44.89 | 48.66 |
| TraesCS1D01G072600.1 | Wheat | nucleus | 33.13 | 33.54 |
| TraesCS1B01G088500.1 | Wheat | nucleus | 32.51 | 32.61 |
| GSMUA_Achr8P21100_001 | Banana | nucleus | 20.43 | 32.35 |
| Os05t0128000-00 | Rice | nucleus | 32.82 | 31.83 |
| Zm00001d035457_P001 | Maize | nucleus | 31.58 | 30.45 |
| HORVU1Hr1G014950.2 | Barley | mitochondrion | 33.13 | 30.31 |
| OQU77323 | Sorghum | nucleus | 31.58 | 23.94 |
| AT3G25990.1 | Thale cress | cytosol | 19.2 | 16.67 |
| AT1G13450.1 | Thale cress | nucleus | 17.03 | 13.55 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.20 | EntrezGene:831895 | UniProt:A0A178UAE8 | ProteinID:AAF17610.1 | ProteinID:AED90334.1 |
| ArrayExpress:AT5G01380 | EnsemblPlantsGene:AT5G01380 | RefSeq:AT5G01380 | TAIR:AT5G01380 | RefSeq:AT5G01380-TAIR-G | EnsemblPlants:AT5G01380.1 |
| TAIR:AT5G01380.1 | EMBL:AY271677 | Unigene:At.33561 | EMBL:BT028926 | ProteinID:CAB81921.1 | ncoils:Coil |
| GO:GO:0000981 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0042802 | GO:GO:0043565 | InterPro:IPR017877 | InterPro:Myb-like_dom | RefSeq:NP_195758.1 |
| ProteinID:OAO90234.1 | PFAM:PF13837 | PO:PO:0000293 | PFscan:PS50090 | PANTHER:PTHR45378 | UniProt:Q9SDW0 |
| InterPro:SANT/Myb | SMART:SM00717 | InterPro:Trihelix_TF_GT3 | UniParc:UPI00000AA33A | SEG:seg | : |
Description
GT-3ATrihelix transcription factor GT-3a [Source:UniProtKB/Swiss-Prot;Acc:Q9SDW0]
Coordinates
chr5:-:155610..157601
Molecular Weight (calculated)
38274.8 Da
IEP (calculated)
6.523
GRAVY (calculated)
-1.268
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRRNPFQHH HHHHQLHHHL IQQQQLPPPP LSTTATMDPG GGGGGGERIP QWSIEETKEL LAIREELDQT FMETKRNKLL WEVVAAKMAD KGFVRSAEQC
101: KSKWKNLVTR YKACETTEPD AIRQQFPFYN EIQSIFEARM QRMLWSEATE PSTSSKRKHH QFSSDDEEEE VDEPNQDINE ELLSLVETQK RETEVITTST
201: STNPRKRAKK GKGVASGTKA ETAGNTLKDI LEEFMRQTVK MEKEWRDAWE MKEIEREKRE KEWRRRMAEL EEERAATERR WMEREEERRL REEARAQKRD
301: SLIDALLNRL NRDHNDDHHN QGF
101: KSKWKNLVTR YKACETTEPD AIRQQFPFYN EIQSIFEARM QRMLWSEATE PSTSSKRKHH QFSSDDEEEE VDEPNQDINE ELLSLVETQK RETEVITTST
201: STNPRKRAKK GKGVASGTKA ETAGNTLKDI LEEFMRQTVK MEKEWRDAWE MKEIEREKRE KEWRRRMAEL EEERAATERR WMEREEERRL REEARAQKRD
301: SLIDALLNRL NRDHNDDHHN QGF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.