CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65719	Soybean	cytosol	87.87	87.55
KRH49393	Soybean	nucleus	71.32	66.67
KRH00261	Soybean	nucleus	69.85	65.07
VIT_08s0105g00400.t01	Wine grape	nucleus	61.76	60.65
Solyc09g005560.2.1	Tomato	nucleus	61.76	57.34
PGSC0003DMT400077751	Potato	nucleus	62.13	56.71
AT2G38250.1	Thale cress	nucleus	55.15	51.9
Bra000046.1-P	Field mustard	nucleus	52.94	48.98
CDY07745	Canola	nucleus	52.94	48.98
Bra005127.1-P	Field mustard	nucleus	51.84	48.29
CDY14474	Canola	nucleus	51.47	47.95
CDX74901	Canola	nucleus	51.84	47.8
CDX91438	Canola	nucleus	51.1	47.6
Bra005688.1-P	Field mustard	nucleus	48.9	46.5
AT5G01380.1	Thale cress	nucleus	52.94	44.58
CDY11203	Canola	nucleus	51.84	44.2
CDX80775	Canola	nucleus	51.1	43.57
CDY10496	Canola	nucleus	50.74	43.53
CDY04841	Canola	nucleus	48.53	42.58
Bra028899.1-P	Field mustard	nucleus	38.24	42.45
KRH76406	Soybean	nucleus	44.85	39.61
TraesCS1D01G072600.1	Wheat	nucleus	39.34	33.54
TraesCS1B01G088500.1	Wheat	nucleus	38.97	32.92
GSMUA_Achr8P21100_001	Banana	nucleus	22.79	30.39
Os05t0128000-00	Rice	nucleus	37.13	30.33
Zm00001d035457_P001	Maize	nucleus	37.13	30.15
HORVU1Hr1G014950.2	Barley	mitochondrion	38.97	30.03
OQU77323	Sorghum	nucleus	39.71	25.35
KRH31419	Soybean	nucleus	18.75	13.64
KRG97471	Soybean	nucleus	18.75	13.56

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100791013	MapMan:15.5.20	EMBL:ACUP02000530	EnsemblPlantsGene:GLYMA_01G121000	GO:GO:0000981
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	UniProt:I1J7E1
InterPro:IPR017877	EnsemblPlants:KRH75965	ProteinID:KRH75965	ProteinID:KRH75965.1	InterPro:Myb-like_dom	PFAM:PF13837
PFscan:PS50090	PANTHER:PTHR45378	InterPro:Trihelix_TF_GT3	UniParc:UPI00023374E7	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:41469409..41471354

Molecular Weight (calculated)

32752.7 Da

IEP (calculated)

8.114

GRAVY (calculated)

-1.246

Length

272 amino acids

Sequence
(BLAST)

001: MEGTHHLHHH HQGHQQQQQQ RVLPQNMNVD VTDRFPQWSI QETKEFLVIR EELDQTFMET KRNKQLWEVI SNRMKEKGYH RSAEQCKCKW KNLVTRYKGF
101: ETMEQEATRQ QFPFYNEFNA IFTARMQRML WAEAEGGSKK NKATTQLSSD ENEESTEAGS GRKKKKAKIG SRGGDNCSGS FNSLKEILEE FMRQQMQIDT
201: QWMEAFEARE NERRLKEMEW RQAMEVLENE RIMMEERWRE REEQRRIREE ARAEKRDALI TALLNKLERQ GM

Best Arabidopsis Sequence Match ( AT2G38250.1 )
(BLAST)

001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL

Arabidopsis Description

GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.