CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97471
KRH31419

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13450.1	KRG97471	AT1G13450.1	21245844
AT1G13450.1	KRH31419	AT1G13450.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31419	Soybean	nucleus	99.2	99.73
VIT_01s0010g02420.t01	Wine grape	nucleus	79.52	80.81
Solyc12g077540.1.1	Tomato	nucleus	55.05	68.77
CDY26652	Canola	cytosol	70.21	67.52
CDY30031	Canola	nucleus	70.48	66.42
Bra019721.1-P	Field mustard	nucleus	70.48	66.25
Bra026903.1-P	Field mustard	nucleus	70.21	65.67
CDY16091	Canola	nucleus	70.21	65.51
CDX98101	Canola	nucleus	68.88	64.91
AT1G13450.1	Thale cress	nucleus	68.62	63.55
TraesCS2D01G343200.1	Wheat	nucleus	46.01	59.45
TraesCS2B01G363200.2	Wheat	nucleus	56.38	58.73
HORVU2Hr1G084030.2	Barley	cytosol	55.05	57.34
TraesCS2A01G320100.1	Wheat	nucleus	54.52	56.79
HORVU2Hr1G046270.1	Barley	cytosol	23.67	56.69
Zm00001d025720_P002	Maize	nucleus	52.93	52.51
EES11021	Sorghum	nucleus	53.19	52.36
GSMUA_Achr5P17240_001	Banana	nucleus	27.13	46.79
KRH76406	Soybean	nucleus	15.43	18.83
KRH75965	Soybean	nucleus	13.56	18.75
KRH65719	Soybean	cytosol	13.03	17.95
KRH49393	Soybean	nucleus	13.83	17.87
KRH00261	Soybean	nucleus	13.3	17.12

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100137074	MapMan:15.5.20	UniProt:A9UHK7	EMBL:ACUP02010799	EMBL:EU285265
EnsemblPlantsGene:GLYMA_18G010000	GO:GO:0000981	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017877	EnsemblPlants:KRG97471	ProteinID:KRG97471	ProteinID:KRG97471.1
InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45169	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF101447	UniParc:UPI00016160AE	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:710647..715894

Molecular Weight (calculated)

43070.9 Da

IEP (calculated)

5.565

GRAVY (calculated)

-0.798

Length

376 amino acids

Sequence
(BLAST)

001: MYLSEKPRPI DFYKEEGARD MMIEVVSNGD LPPPPPPPPP PMILGESSGE DPEVEIKAPK KRAETWVQDE TRSLIGLRRE MDSLFNTSKS NKHLWEQISA
101: KMREKGFDRS PTMCTDKWRN LLKEFKKAKH QDRGSGSAKM SYYKEIDEIL RERSKNVQYK SPTPPPKVDS FMQFADKGID DTSISFGPVE ATGRPTLNLE
201: RSLDHDGHPL AITTADAVAA SGVPPWNWRE TPGNGGESQS CCGRVISVKW GDYTRRIGID GTPEAIKEAI RAAFRLRTKR TFWLEDEDQI IRSIDREMPL
301: GNYTLHIDEG MAIKLPLYDE PDHIPVHTED KIFYTEDDFR DFLTRRGWIC LREFDSYRNI DNMDDLRPGA IYRGVS

Best Arabidopsis Sequence Match ( AT1G13450.1 )
(BLAST)

001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR

Arabidopsis Description

GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.