Factsheet for Bra019721.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009045.1-P
Bra019721.1-P
Bra026903.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13450.1	Bra019721.1-P	AT1G13450.1	21245844
AT1G13450.1	Bra026903.1-P	AT1G13450.1	21245844
AT1G13450.1	Bra009045.1-P	AT5G10270.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98101	Canola	nucleus	96.75	96.99
CDY30031	Canola	nucleus	96.25	96.49
Bra026903.1-P	Field mustard	nucleus	83.25	82.84
AT1G13450.1	Thale cress	nucleus	81.5	80.3
KRH31419	Soybean	nucleus	66.25	70.86
VIT_01s0010g02420.t01	Wine grape	nucleus	65.5	70.81
KRG97471	Soybean	nucleus	66.25	70.48
Bra036354.1-P	Field mustard	nucleus	63.5	64.3
Solyc12g077540.1.1	Tomato	nucleus	46.25	61.46
TraesCS2D01G343200.1	Wheat	nucleus	40.75	56.01
HORVU2Hr1G046270.1	Barley	cytosol	21.5	54.78
TraesCS2B01G363200.2	Wheat	nucleus	48.5	53.74
TraesCS2A01G320100.1	Wheat	nucleus	48.25	53.46
HORVU2Hr1G084030.2	Barley	cytosol	48.25	53.46
Zm00001d025720_P002	Maize	nucleus	47.25	49.87
EES11021	Sorghum	nucleus	47.25	49.48
GSMUA_Achr5P17240_001	Banana	nucleus	24.25	44.5
Bra000046.1-P	Field mustard	nucleus	15.0	20.41
Bra005127.1-P	Field mustard	nucleus	14.75	20.21
Bra028899.1-P	Field mustard	nucleus	10.5	17.14
Bra005688.1-P	Field mustard	nucleus	11.75	16.43

Protein Annotations

EnsemblPlants:Bra019721.1	EnsemblPlants:Bra019721.1-P	EnsemblPlantsGene:Bra019721	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom
InterPro:SANT/Myb	PANTHER:PTHR45169	PFAM:PF13837	PFscan:PS50090	SEG:seg	SMART:SM00717
UniParc:UPI000253ED83	UniProt:M4DT78	MapMan:15.5.20	:	:	:

Description

AT1G13450 (E=2e-188) | DNA binding protein GT-1

Coordinates

chrA06:-:4784186..4785926

Molecular Weight (calculated)

46035.8 Da

IEP (calculated)

7.136

GRAVY (calculated)

-0.922

Length

400 amino acids

Sequence
(BLAST)

001: MFVSDKPRPN DFYKDDNTNS STAARNMIID GDLQPHNHHP HHNHNHNHHH HNHLQPQQIL LGESSGEDHE VKAPKKRAET WVQDETRSLI MFRRGMDGLF
101: NTSKSNKHLW EEISAKMREK GFDRSPTMCT DKWRNLLKEY KKAKHHDRGN VSAKMSYYKE IEDILRERSK KVTTQYSKSP NTPPIAKVDS FMQFTDKGFD
201: DPSISFGSVE ANGRPGLNLE RSLDHDGHPL AITTVDAVPA NGVPPWNWRE TPGNGGDAHG QPFGGRVITV KFGDYTRRIG VDGTAEAIKE TIRSAFSLRT
301: RRAFWLEDED QVVRCLDRDM PLGNYLLHVD GGVAIRVCHY DESNQLPVHT EEKIFYTEED YRDFLARRGW TYLQVDGFRN IDNMDDLQAG AVYRGVRERM

Best Arabidopsis Sequence Match ( AT1G13450.1 )
(BLAST)

001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR

Arabidopsis Description

GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.