Factsheet for Bra000046.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07745	Canola	nucleus	98.3	98.3
Bra005127.1-P	Field mustard	nucleus	82.31	82.88
AT2G38250.1	Thale cress	nucleus	77.55	78.89
KRH75965	Soybean	nucleus	48.98	52.94
KRH65719	Soybean	cytosol	48.98	52.75
KRH49393	Soybean	nucleus	50.34	50.86
VIT_08s0105g00400.t01	Wine grape	nucleus	47.28	50.18
KRH00261	Soybean	nucleus	49.66	50.0
PGSC0003DMT400077751	Potato	nucleus	50.68	50.0
Solyc09g005560.2.1	Tomato	nucleus	48.64	48.81
Bra005688.1-P	Field mustard	nucleus	45.58	46.85
Bra028899.1-P	Field mustard	nucleus	36.73	44.08
GSMUA_Achr8P21100_001	Banana	nucleus	24.15	34.8
TraesCS1D01G072600.1	Wheat	nucleus	37.07	34.17
TraesCS1B01G088500.1	Wheat	nucleus	36.39	33.23
Os05t0128000-00	Rice	nucleus	36.39	32.13
Zm00001d035457_P001	Maize	nucleus	35.37	31.04
HORVU1Hr1G014950.2	Barley	mitochondrion	35.71	29.75
OQU77323	Sorghum	nucleus	37.76	26.06
Bra036354.1-P	Field mustard	nucleus	22.45	16.71
Bra019721.1-P	Field mustard	nucleus	20.41	15.0
Bra026903.1-P	Field mustard	nucleus	19.73	14.43

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	EnsemblPlantsGene:Bra000046	EnsemblPlants:Bra000046.1	EnsemblPlants:Bra000046.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR017877	UniProt:M4C768
InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45378	InterPro:SANT/Myb	SMART:SM00717
InterPro:Trihelix_TF_GT3	UniParc:UPI000254008D	SEG:seg	:	:	:

Description

AT2G38250 (E=3e-073) | DNA-binding protein-related

Coordinates

chrA03:+:9018250..9019385

Molecular Weight (calculated)

34849.1 Da

IEP (calculated)

7.078

GRAVY (calculated)

-1.186

Length

294 amino acids

Sequence
(BLAST)

001: MDGHQHQLHH LQYLKKHSHH VHPQSQTPEI ASPATVAAGD RFPQWSLEET KELIAIRGEL DQTFMETKRN KLLWEVVSNK MRDKSFLRSP EQCKCKWKNL
101: VTRFKGCETM DAESARQQFP FYDDMEIIFT SRMQRMIWVE SEGGGGGASG TTRKRSHSEQ FSSDEEEENV NEELVDISND PKIPNPKKNI VKKRKGGISN
201: SNASNSVREV LDEFMRHQMR MENEWIERWE AREKERAERE EEWRGKMEEI EKERVKMERM WRDREDQRRS REEMKAEKRD SLISALLAKL TRDG

Best Arabidopsis Sequence Match ( AT2G38250.1 )
(BLAST)

001: MDGHQHHHLH QLQYLNKHHL HTQSQTPEIA SPVAVGDRFP QWSVEETKEL IGIRGELDQT FMETKRNKLL WEVISNKMRD KSFPRSPEQC KCKWKNLVTR
101: FKGCETMEAE TARQQFPFYD DMQNIFTTRM QRMLWAESEG GGGGTSGAAR KREYSSDEEE ENVNEELVDV SNDPKILNPK KNIAKKRKGG SNSSNSNNGV
201: REVLEEFMRH QVRMESEWRE GWEAREKERA EKEEEWRRKM EELEKERLAM ERMWRDREEQ RRSREEMRAE KRDSLINALL AKLTRDGSL

Arabidopsis Description

GT-3BTrihelix transcription factor GT-3b [Source:UniProtKB/Swiss-Prot;Acc:O80450]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.