CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0128000-00	Rice	nucleus	48.83	62.46
Zm00001d035457_P001	Maize	nucleus	48.36	61.49
TraesCS1B01G088500.1	Wheat	nucleus	45.31	59.94
TraesCS1D01G072600.1	Wheat	nucleus	44.6	59.56
HORVU1Hr1G014950.2	Barley	mitochondrion	45.77	55.24
KRH75965	Soybean	nucleus	25.35	39.71
KRH65719	Soybean	cytosol	24.88	38.83
GSMUA_Achr8P21100_001	Banana	nucleus	18.54	38.73
Bra000046.1-P	Field mustard	nucleus	26.06	37.76
CDY07745	Canola	nucleus	26.06	37.76
CDY14474	Canola	nucleus	25.82	37.67
VIT_08s0105g00400.t01	Wine grape	nucleus	24.18	37.18
KRH49393	Soybean	nucleus	25.35	37.11
AT2G38250.1	Thale cress	nucleus	24.65	36.33
KRH00261	Soybean	nucleus	24.88	36.3
Bra005127.1-P	Field mustard	nucleus	24.88	36.3
CDX91438	Canola	nucleus	24.65	35.96
CDX74901	Canola	nucleus	24.65	35.59
Bra005688.1-P	Field mustard	nucleus	23.24	34.62
Solyc09g005560.2.1	Tomato	nucleus	23.47	34.13
PGSC0003DMT400077751	Potato	nucleus	23.47	33.56
CDY11203	Canola	nucleus	24.65	32.92
CDX80775	Canola	nucleus	24.65	32.92
CDY10496	Canola	nucleus	24.18	32.49
Bra028899.1-P	Field mustard	nucleus	18.54	32.24
EES12791	Sorghum	nucleus	20.19	31.73
AT5G01380.1	Thale cress	nucleus	23.94	31.58
CDY04841	Canola	nucleus	22.07	30.32
EES11021	Sorghum	nucleus	13.15	14.66

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	EntrezGene:8068166	UniProt:A0A1Z5R0L5	GO:GO:0000981	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR017877	InterPro:Myb-like_dom
EnsemblPlants:OQU77323	ProteinID:OQU77323	ProteinID:OQU77323.1	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45378
EnsemblPlantsGene:SORBI_3009G028300	InterPro:Trihelix_TF_GT3	UniParc:UPI000B8BAAEE	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:2550145..2555075

Molecular Weight (calculated)

46400.6 Da

IEP (calculated)

6.731

GRAVY (calculated)

-0.765

Length

426 amino acids

Sequence
(BLAST)

001: MDPFHHLNTS FSNPYHPLLS PSPPHHPHFP PLPPLPDPPH HQLPSASAAS SAAAATSLER DRLPQWSHAE TAAFLAVRAD LDHSFLTTKR NKALWEAVSA
101: RLHAQGFART PDQCKSKWKN LVTRFKGTEA AAAAAAAAAA AAVVDPASAS AAQSRPQFPF HDEVRRIFDA RAERAQALER KRAKGKGVRD RDDEGAGEGE
201: DVDEEDEDDE IEADAAEAAV GGDEELPVDA SRSGGGGGGG TKKRRRKQQQ QAARAARVAA DQGEVEAMLR EFMRRQAEME ERWVEAAEAR EAERRAREEE
301: WRAAMVALGE ERLALVRRWR EREDAWRARA EEREERRHQL VAALLAKLGG GGGGGGDSRA SVAMHASIDP SAVARDATSS VQNPPAHRYG PNPSTPYSLI
401: LIVMSSSSSE QRCFTAKSAH RPDSYS

Best Arabidopsis Sequence Match ( AT5G01380.1 )
(BLAST)

001: MDRRNPFQHH HHHHQLHHHL IQQQQLPPPP LSTTATMDPG GGGGGGERIP QWSIEETKEL LAIREELDQT FMETKRNKLL WEVVAAKMAD KGFVRSAEQC
101: KSKWKNLVTR YKACETTEPD AIRQQFPFYN EIQSIFEARM QRMLWSEATE PSTSSKRKHH QFSSDDEEEE VDEPNQDINE ELLSLVETQK RETEVITTST
201: STNPRKRAKK GKGVASGTKA ETAGNTLKDI LEEFMRQTVK MEKEWRDAWE MKEIEREKRE KEWRRRMAEL EEERAATERR WMEREEERRL REEARAQKRD
301: SLIDALLNRL NRDHNDDHHN QGF

Arabidopsis Description

GT-3ATrihelix transcription factor GT-3a [Source:UniProtKB/Swiss-Prot;Acc:Q9SDW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.