CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G01380.1	Thale cress	nucleus	73.82	72.45
CDX80775	Canola	nucleus	71.92	71.47
CDY11203	Canola	nucleus	71.92	71.47
CDY04841	Canola	nucleus	67.19	68.71
KRH75965	Soybean	nucleus	43.53	50.74
PGSC0003DMT400077751	Potato	nucleus	47.32	50.34
KRH65719	Soybean	cytosol	43.22	50.18
KRH49393	Soybean	nucleus	46.06	50.17
VIT_08s0105g00400.t01	Wine grape	nucleus	43.22	49.46
Solyc09g005560.2.1	Tomato	nucleus	45.43	49.15
KRH00261	Soybean	nucleus	44.8	48.63
CDY14474	Canola	nucleus	42.9	46.58
CDX74901	Canola	nucleus	42.9	46.1
CDY07745	Canola	nucleus	42.59	45.92
CDX91438	Canola	nucleus	41.32	44.86
TraesCS1D01G072600.1	Wheat	nucleus	34.7	34.48
GSMUA_Achr8P21100_001	Banana	nucleus	22.08	34.31
TraesCS1B01G088500.1	Wheat	nucleus	34.7	34.16
Os05t0128000-00	Rice	nucleus	33.44	31.83
Zm00001d035457_P001	Maize	nucleus	33.44	31.64
HORVU1Hr1G014950.2	Barley	mitochondrion	34.07	30.59
OQU77323	Sorghum	nucleus	32.49	24.18
CDY20323	Canola	cytosol	4.73	17.24
CDY26652	Canola	cytosol	18.3	14.83
CDX99735	Canola	nucleus	18.61	14.79
CDY30031	Canola	nucleus	17.98	14.29
CDX98101	Canola	nucleus	17.98	14.29
CDY16091	Canola	nucleus	17.98	14.14
CDX97872	Canola	cytosol	3.79	13.79
CDY40984	Canola	nucleus	16.4	13.23

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.20	GO:A0A078FAR2	UniProt:A0A078FAR2	EnsemblPlants:CDY10496	ProteinID:CDY10496
ProteinID:CDY10496.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EnsemblPlantsGene:GSBRNA2T00032435001	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090
PANTHER:PTHR45378	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	InterPro:Trihelix_TF_GT3	UniParc:UPI0004EAFE0A
SEG:seg	:	:	:	:	:

Description

BnaCnng03970DBnaCnng03970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAR2]

Coordinates

chrLK032003:-:839795..842351

Molecular Weight (calculated)

37612.0 Da

IEP (calculated)

6.714

GRAVY (calculated)

-1.292

Length

317 amino acids

Sequence
(BLAST)

001: MDQRNPFHHH HHHHHQHHHL IQQQQLPPPP QSTTAAMDPG GGGERIPQWS LEETKELLGI REELDQTFME TKRNKLLWEV VAAKMADKGF ARTAEQCKSK
101: WKNLVTRYKA CETTEPEAIR QQFPYYNEIQ SIFTARMQRV LWSEATEAST SSKRKNHQFS SDEEEEEEAE EPNQSINEEL VAFVETQEKV ITTSTCTNPR
201: KRAKKGKGIT GSTKAETAGS TLKEILEDFM RQTVKMEKEW RDAWEMKERE REKRETEWRR RMSELEEERS ATERRWMERE NERRLREEAR AQKRDTIIDI
301: LLSKLNKDKN DDQHQGF

Best Arabidopsis Sequence Match ( AT5G01380.1 )
(BLAST)

001: MDRRNPFQHH HHHHQLHHHL IQQQQLPPPP LSTTATMDPG GGGGGGERIP QWSIEETKEL LAIREELDQT FMETKRNKLL WEVVAAKMAD KGFVRSAEQC
101: KSKWKNLVTR YKACETTEPD AIRQQFPFYN EIQSIFEARM QRMLWSEATE PSTSSKRKHH QFSSDDEEEE VDEPNQDINE ELLSLVETQK RETEVITTST
201: STNPRKRAKK GKGVASGTKA ETAGNTLKDI LEEFMRQTVK MEKEWRDAWE MKEIEREKRE KEWRRRMAEL EEERAATERR WMEREEERRL REEARAQKRD
301: SLIDALLNRL NRDHNDDHHN QGF

Arabidopsis Description

GT-3ATrihelix transcription factor GT-3a [Source:UniProtKB/Swiss-Prot;Acc:Q9SDW0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.