Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20323 | Canola | cytosol | 63.22 | 63.22 |
| HORVU2Hr1G046270.1 | Barley | cytosol | 42.53 | 23.57 |
| CDY40984 | Canola | nucleus | 91.95 | 20.36 |
| CDX99735 | Canola | nucleus | 88.51 | 19.3 |
| AT3G25990.1 | Thale cress | cytosol | 67.82 | 15.86 |
| CDY16091 | Canola | nucleus | 63.22 | 13.65 |
| CDY26652 | Canola | cytosol | 60.92 | 13.55 |
| CDX98101 | Canola | nucleus | 60.92 | 13.28 |
| CDY30031 | Canola | nucleus | 60.92 | 13.28 |
| EES11021 | Sorghum | nucleus | 49.43 | 11.26 |
| Zm00001d025720_P002 | Maize | nucleus | 48.28 | 11.08 |
| TraesCS2A01G320100.1 | Wheat | nucleus | 45.98 | 11.08 |
| HORVU2Hr1G084030.2 | Barley | cytosol | 44.83 | 10.8 |
| TraesCS2B01G363200.2 | Wheat | nucleus | 44.83 | 10.8 |
| CDY04841 | Canola | nucleus | 14.94 | 4.19 |
| CDY10496 | Canola | nucleus | 13.79 | 3.79 |
| CDY14474 | Canola | nucleus | 12.64 | 3.77 |
| CDX91438 | Canola | nucleus | 12.64 | 3.77 |
| CDY11203 | Canola | nucleus | 13.79 | 3.76 |
| CDX80775 | Canola | nucleus | 13.79 | 3.76 |
| CDY07745 | Canola | nucleus | 12.64 | 3.74 |
| CDX74901 | Canola | nucleus | 12.64 | 3.73 |
| GSMUA_Achr5P17240_001 | Banana | nucleus | 5.75 | 2.29 |
| TraesCS2D01G343200.1 | Wheat | nucleus | 5.75 | 1.72 |
Protein Annotations
| EnsemblPlants:CDX97872 | EnsemblPlantsGene:GSBRNA2T00105207001 | GO:A0A078EA22 | PANTHER:PTHR45169 | ProteinID:CDX97872 | ProteinID:CDX97872.1 |
| UniParc:UPI0004EEF44A | MapMan:35.1 | : | : | : | : |
Description
BnaC04g40670D
Coordinates
chrLK031901:+:1153497..1153989
Molecular Weight (calculated)
10317.1 Da
IEP (calculated)
4.524
GRAVY (calculated)
-0.713
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: MPLGNYTLRV DEGIAVRVCH YDESDPLPVH QEEKVFYTEE DYREFLGRRG WTWLREFDGG FRNIDGMVRN VDSMDDLQPG VLYRGMR
001: MFVSDNNNPS RDINMMIGDV TSNGDLQPHQ IILGESSGGE DHEIIKAPKK RAETWAQDET RTLISLRREM DNLFNTSKSN KHLWEQISKK MREKGFDRSP
101: SMCTDKWRNI LKEFKKAKQH EDKATSGGST KMSYYNEIED IFRERKKKVA FYKSPATTTP SSAKVDSFMQ FTDKGFEDTG ISFTSVEANG RPTLNLETEL
201: DHDGLPLPIA ADPITANGVP PWNWRDTPGN GVDGQPFAGR IITVKFGDYT RRVGIDGTAE AIKEAIRSAF RLRTRRAFWL EDEEQVIRSL DRDMPLGNYI
301: LRIDEGIAVR VCHYDESDPL PVHQEEKIFY TEEDYRDFLA RRGWTCLREF DAFQNIDNMD ELQSGRLYRG MR
101: SMCTDKWRNI LKEFKKAKQH EDKATSGGST KMSYYNEIED IFRERKKKVA FYKSPATTTP SSAKVDSFMQ FTDKGFEDTG ISFTSVEANG RPTLNLETEL
201: DHDGLPLPIA ADPITANGVP PWNWRDTPGN GVDGQPFAGR IITVKFGDYT RRVGIDGTAE AIKEAIRSAF RLRTRRAFWL EDEEQVIRSL DRDMPLGNYI
301: LRIDEGIAVR VCHYDESDPL PVHQEEKIFY TEEDYRDFLA RRGWTCLREF DAFQNIDNMD ELQSGRLYRG MR
Arabidopsis Description
GT-4Trihelix transcription factor GT-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU92]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.