CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69849
CDX96988
CDX98101
CDY16091
CDY26652
CDY30031

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13450.1	CDX98101	AT1G13450.1	21245844
AT1G13450.1	CDY16091	AT1G13450.1	21245844
AT1G13450.1	CDY26652	AT1G13450.1	21245844
AT1G13450.1	CDY30031	AT1G13450.1	21245844
AT1G13450.1	CDX69849	AT5G10270.1	12678503
AT1G13450.1	CDX96988	AT5G10270.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026903.1-P	Field mustard	nucleus	97.95	95.27
CDY16091	Canola	nucleus	95.4	92.56
CDX98101	Canola	nucleus	82.61	80.95
CDY30031	Canola	nucleus	82.61	80.95
AT1G13450.1	Thale cress	nucleus	81.33	78.33
KRH31419	Soybean	nucleus	67.52	70.59
KRG97471	Soybean	nucleus	67.52	70.21
VIT_01s0010g02420.t01	Wine grape	nucleus	65.98	69.73
CDY40984	Canola	nucleus	64.45	64.12
CDX99735	Canola	nucleus	64.71	63.41
CDX97872	Canola	cytosol	13.55	60.92
Solyc12g077540.1.1	Tomato	nucleus	46.8	60.8
TraesCS2D01G343200.1	Wheat	nucleus	41.69	56.01
HORVU2Hr1G046270.1	Barley	cytosol	21.74	54.14
HORVU2Hr1G084030.2	Barley	cytosol	49.62	53.74
TraesCS2B01G363200.2	Wheat	nucleus	49.62	53.74
TraesCS2A01G320100.1	Wheat	nucleus	48.59	52.63
EES11021	Sorghum	nucleus	49.36	50.52
Zm00001d025720_P002	Maize	nucleus	48.59	50.13
GSMUA_Achr5P17240_001	Banana	nucleus	25.83	46.33
CDY20323	Canola	cytosol	9.46	42.53
CDY14474	Canola	nucleus	15.09	20.21
CDX91438	Canola	nucleus	14.83	19.86
CDX74901	Canola	nucleus	14.83	19.66
CDY07745	Canola	nucleus	14.58	19.39
CDY10496	Canola	nucleus	14.83	18.3
CDY04841	Canola	nucleus	14.32	18.06
CDY11203	Canola	nucleus	14.07	17.24
CDX80775	Canola	nucleus	14.07	17.24

Protein Annotations

EnsemblPlants:CDY26652	EnsemblPlantsGene:GSBRNA2T00035532001	Gene3D:1.10.10.60	GO:A0A078GN89	InterPro:IPR017877	InterPro:Myb-like_dom
InterPro:SANT/Myb	PANTHER:PTHR45169	PFAM:PF13837	PFscan:PS50090	ProteinID:CDY26652	ProteinID:CDY26652.1
SEG:seg	SMART:SM00717	UniParc:UPI0004EF3B22	UniProt:A0A078GN89	MapMan:15.5.20	:

Description

BnaA09g46250DBnaA09g46250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GN89]

Coordinates

chrLK032192:-:500595..502852

Molecular Weight (calculated)

45067.0 Da

IEP (calculated)

8.070

GRAVY (calculated)

-0.831

Length

391 amino acids

Sequence
(BLAST)

001: MFVSDKPRPI DFYKDDNTTT ARDNMIIDVT TNAPGRDLHP HHHHHHLQPQ QILLGESSGE DHEVKAPKKR AETWVQDETR SLIMFRRGMD GLFNTSKSNK
101: HLWEQISAKM REKGFDRSPT MCTDKWRNLL KEFKKAKHHD RGNRSAKMSY YKEIEEILRE RSKKVTATGQ YSKSSNATPT AKVDSFMQFT DKGFDDPSIS
201: FGSVEANGRP ALNLERRLDH DGHPLAIATV DAVAANGVPP WNWRETPGNG KLRHMPFGGR VITVKFGDYT RRIGVDGSTE AIKDTIRSAF GLRTRRAFWL
301: EDEDQVVRCL DRDMPLGNYL LHIDDGLAIR VCHYDESNQL PVHTEEKVFY TEEDYRDFLA RRGWTCLQFD GFRNIENMDD LQPGAVYRGV R

Best Arabidopsis Sequence Match ( AT1G13450.1 )
(BLAST)

001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR

Arabidopsis Description

GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.