Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d012392_P001 | |
| Zm00001d025720_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G13450.1 | Zm00001d025720_P002 | AT1G13450.1 | 21245844 |
| AT1G13450.1 | Zm00001d012392_P001 | AT5G10270.1 | 12678503 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11021 | Sorghum | nucleus | 91.56 | 90.84 |
| HORVU2Hr1G046270.1 | Barley | cytosol | 30.61 | 73.89 |
| TraesCS2D01G343200.1 | Wheat | nucleus | 54.35 | 70.79 |
| TraesCS2B01G363200.2 | Wheat | nucleus | 66.75 | 70.08 |
| TraesCS2A01G320100.1 | Wheat | nucleus | 66.23 | 69.53 |
| HORVU2Hr1G084030.2 | Barley | cytosol | 64.64 | 67.87 |
| GSMUA_Achr3P19370_001 | Banana | nucleus | 56.99 | 58.86 |
| GSMUA_Achr5P17230_001 | Banana | cytosol | 31.93 | 58.74 |
| KRH31419 | Soybean | nucleus | 52.51 | 53.21 |
| KRG97471 | Soybean | nucleus | 52.51 | 52.93 |
| VIT_01s0010g02420.t01 | Wine grape | nucleus | 51.19 | 52.43 |
| VIT_14s0171g00450.t01 | Wine grape | nucleus | 51.98 | 52.12 |
| Solyc12g077540.1.1 | Tomato | nucleus | 41.16 | 51.83 |
| CDY40984 | Canola | nucleus | 50.66 | 48.85 |
| CDY26652 | Canola | cytosol | 50.13 | 48.59 |
| AT3G25990.1 | Thale cress | cytosol | 47.49 | 48.39 |
| CDX97872 | Canola | cytosol | 11.08 | 48.28 |
| Bra036354.1-P | Field mustard | nucleus | 50.13 | 48.1 |
| Bra026903.1-P | Field mustard | nucleus | 50.13 | 47.26 |
| Bra019721.1-P | Field mustard | nucleus | 49.87 | 47.25 |
| CDY30031 | Canola | nucleus | 49.6 | 47.12 |
| CDY16091 | Canola | nucleus | 49.87 | 46.9 |
| CDX98101 | Canola | nucleus | 49.34 | 46.87 |
| AT1G13450.1 | Thale cress | nucleus | 50.13 | 46.8 |
| CDX99735 | Canola | nucleus | 49.08 | 46.62 |
| CDY20323 | Canola | cytosol | 10.03 | 43.68 |
| VIT_17s0000g10420.t01 | Wine grape | nucleus | 37.73 | 41.81 |
| GSMUA_Achr5P17240_001 | Banana | nucleus | 21.11 | 36.7 |
| Zm00001d035457_P001 | Maize | nucleus | 15.83 | 17.91 |
| Zm00001d002424_P002 | Maize | nucleus | 12.4 | 17.22 |
| Zm00001d026245_P001 | Maize | nucleus | 11.35 | 16.17 |
Protein Annotations
| EMBL:BT055522 | EMBL:KJ727951 | EnsemblPlants:Zm00001d025720_P002 | EnsemblPlants:Zm00001d025720_T002 | EnsemblPlantsGene:Zm00001d025720 | EntrezGene:100280076 |
| Gene3D:1.10.10.60 | InterPro:IPR017877 | InterPro:Myb-like_dom | InterPro:SANT/Myb | PANTHER:PTHR45169 | PFAM:PF13837 |
| PFscan:PS50090 | ProteinID:AQK44361.1 | ProteinID:AQK44363.1 | SEG:seg | SMART:SM00717 | UniParc:UPI0001917786 |
| UniProt:B8A1T0 | MapMan:15.5.20 | : | : | : | : |
Description
Trihelix-transcription factor 25Trihelix transcription factor GT-1
Coordinates
chr10:+:127515419..127518791
Molecular Weight (calculated)
41938.0 Da
IEP (calculated)
6.684
GRAVY (calculated)
-0.727
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLSGPPPVP TPPLLLPESS GEDGGHDSSS RAAAAVGSAP KRRAETWVRE ETLCLIALRR EMDAHFNTSK SNKHLWEAIS ARMRDQGFDR SPTMCTDKWR
101: NLLKEFKKAR SHSRNSGGGS GSGGNGNAKM AYYKEIDDLL KRRGKATGSG TAGCVGSSAG KSPKSNCKID SYLQFTTDNG FEDANIPFGP VEANGRTILS
201: IDDRLEDDRH QLPLTAADAV ATNGVNPWNW RDTSTDGGDN RGNFGGRVIL VKWGDYTKRI GIDGTPEAIK EAIKSAFGLR TRRAFWLEDE DEVVRTLDRD
301: MPVGTYTLNL DDGMTIKLCD ASRMQTPEDK TFYTEEDFRD FLSRRGWTFL REYGGYRNVD SLDDLRPGVM YQGLRSLGD
101: NLLKEFKKAR SHSRNSGGGS GSGGNGNAKM AYYKEIDDLL KRRGKATGSG TAGCVGSSAG KSPKSNCKID SYLQFTTDNG FEDANIPFGP VEANGRTILS
201: IDDRLEDDRH QLPLTAADAV ATNGVNPWNW RDTSTDGGDN RGNFGGRVIL VKWGDYTKRI GIDGTPEAIK EAIKSAFGLR TRRAFWLEDE DEVVRTLDRD
301: MPVGTYTLNL DDGMTIKLCD ASRMQTPEDK TFYTEEDFRD FLSRRGWTFL REYGGYRNVD SLDDLRPGVM YQGLRSLGD
001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR
Arabidopsis Description
GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.