Factsheet for GSMUA_Achr5P17240_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
peroxisome 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P17240_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13450.1	GSMUA_Achr5P17240_001	AT1G13450.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P19370_001	Banana	nucleus	49.08	29.16
TraesCS2D01G343200.1	Wheat	nucleus	38.07	28.52
Solyc12g077540.1.1	Tomato	nucleus	38.53	27.91
KRH31419	Soybean	nucleus	46.79	27.27
KRG97471	Soybean	nucleus	46.79	27.13
VIT_01s0010g02420.t01	Wine grape	nucleus	45.87	27.03
CDY26652	Canola	cytosol	46.33	25.83
Bra026903.1-P	Field mustard	nucleus	46.33	25.12
CDY16091	Canola	nucleus	46.33	25.06
AT1G13450.1	Thale cress	nucleus	45.87	24.63
CDX98101	Canola	nucleus	44.5	24.31
Bra019721.1-P	Field mustard	nucleus	44.5	24.25
CDY30031	Canola	nucleus	44.04	24.06
CDY40984	Canola	nucleus	42.2	23.41
AT3G25990.1	Thale cress	cytosol	39.91	23.39
Bra036354.1-P	Field mustard	nucleus	42.2	23.29
TraesCS2B01G363200.2	Wheat	nucleus	38.53	23.27
TraesCS2A01G320100.1	Wheat	nucleus	38.53	23.27
HORVU2Hr1G084030.2	Barley	cytosol	38.07	22.99
CDX99735	Canola	nucleus	41.74	22.81
EES11021	Sorghum	nucleus	37.61	21.47
VIT_17s0000g10420.t01	Wine grape	nucleus	33.49	21.34
Zm00001d025720_P002	Maize	nucleus	36.7	21.11
GSMUA_Achr8P21100_001	Banana	nucleus	15.6	16.67
GSMUA_Achr7P04840_001	Banana	nucleus	19.72	14.14
GSMUA_AchrUn_...	Banana	nucleus	10.55	10.45
CDY20323	Canola	cytosol	3.21	8.05
CDX97872	Canola	cytosol	2.29	5.75
GSMUA_Achr5P17230_001	Banana	cytosol	5.05	5.34
HORVU2Hr1G046270.1	Barley	cytosol	2.75	3.82

Protein Annotations

EnsemblPlants:GSMUA_Achr5P17240_001	EnsemblPlants:GSMUA_Achr5T17240_001	EnsemblPlantsGene:GSMUA_Achr5G17240_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom	InterPro:SANT/Myb
PANTHER:PTHR45169	PFAM:PF13837	PFscan:PS50090	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI0002965597	UniProt:M0SZA3	MapMan:15.5.20	:	:	:

Description

Putative Zinc finger and SCAN domain-containing protein 20 [Source:GMGC_GENE;Acc:GSMUA_Achr5G17240_001]

Coordinates

chr5:-:16263836..16265925

Molecular Weight (calculated)

24773.9 Da

IEP (calculated)

9.685

GRAVY (calculated)

-0.516

Length

218 amino acids

Sequence
(BLAST)

001: MSLLTLDQFL SRSLHSRANI IGEDAAVATA RRMYSTEKPC GVDFYNGGLP PPPQMILAES SGEDHEVRAP KKRAETWIQE ETKSLIALRR EIDGLFNTSK
101: SNRHLWEQIS TKMREKGFDR SPTMCTDKWR NLLKEFKKAK HQIKGSGSVK MSYYKELDEL LKERSKKAGF KSSAASKVDA YLHFPDKGLE DANIPLGPVE
201: GIKKLYSCAI FFCMVIFF

Best Arabidopsis Sequence Match ( AT1G13450.4 )
(BLAST)

001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEGT YLSLLVCLL

Arabidopsis Description

GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.