CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97471
KRH31419

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13450.1	KRG97471	AT1G13450.1	21245844
AT1G13450.1	KRH31419	AT1G13450.1	21245844

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97471	Soybean	nucleus	99.73	99.2
VIT_01s0010g02420.t01	Wine grape	nucleus	79.95	80.81
Solyc12g077540.1.1	Tomato	nucleus	55.08	68.44
CDY26652	Canola	cytosol	70.59	67.52
CDY30031	Canola	nucleus	70.86	66.42
Bra019721.1-P	Field mustard	nucleus	70.86	66.25
Bra026903.1-P	Field mustard	nucleus	70.59	65.67
CDY16091	Canola	nucleus	70.59	65.51
CDX98101	Canola	nucleus	69.25	64.91
AT1G13450.1	Thale cress	nucleus	68.98	63.55
TraesCS2D01G343200.1	Wheat	nucleus	45.99	59.11
TraesCS2B01G363200.2	Wheat	nucleus	56.42	58.45
HORVU2Hr1G084030.2	Barley	cytosol	55.35	57.34
HORVU2Hr1G046270.1	Barley	cytosol	23.8	56.69
TraesCS2A01G320100.1	Wheat	nucleus	54.55	56.51
Zm00001d025720_P002	Maize	nucleus	53.21	52.51
EES11021	Sorghum	nucleus	53.48	52.36
GSMUA_Achr5P17240_001	Banana	nucleus	27.27	46.79
KRH76406	Soybean	nucleus	15.51	18.83
KRH75965	Soybean	nucleus	13.64	18.75
KRH65719	Soybean	cytosol	13.1	17.95
KRH49393	Soybean	nucleus	13.9	17.87
KRH00261	Soybean	nucleus	13.37	17.12

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100809497	MapMan:15.5.20	UniProt:A0A0R0HW24	EMBL:ACUP02007145	EnsemblPlantsGene:GLYMA_11G247300
GO:GO:0000981	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006357	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017877	EnsemblPlants:KRH31419	ProteinID:KRH31419	ProteinID:KRH31419.1
InterPro:Myb-like_dom	PFAM:PF13837	PFscan:PS50090	PANTHER:PTHR45169	InterPro:SANT/Myb	SMART:SM00717
UniParc:UPI0001B36F3C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:34012913..34018990

Molecular Weight (calculated)

42860.7 Da

IEP (calculated)

5.565

GRAVY (calculated)

-0.786

Length

374 amino acids

Sequence
(BLAST)

001: MYLSEKPRPI DFYKEEGARD MMIEVVSNGD LPPPPPPPPM ILGESSGEDP EVEIKAPKKR AETWVQDETR SLIGLRREMD ALFNTSKSNK HLWEQISAKM
101: REKGFDRSPT MCTDKWRNLL KEFKKAKHQD RGSGSAKMSY YKEIDEILRE RSKNVQYKSP TPPPKVDSFM QFADKGIDDT SISFGPVEAT GRPTLNLERS
201: LDHDGHPLAI TTADAVAASG VPPWNWRETP GNGGESQSCC GRVISVKWGD YTRRIGIDGT PEAIKEAIRA AFRLRTKRTF WLEDEDQIIR SIDREMPLGN
301: YTLHIDEGMA IKLPLYDEPD HIPVHTEDKI FYTEDDFRDF LTRRGWICLR EFDSYRNIDN MDDLRPGAIY RGVS

Best Arabidopsis Sequence Match ( AT1G13450.1 )
(BLAST)

001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR

Arabidopsis Description

GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.