Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019721.1-P | Field mustard | nucleus | 80.3 | 81.5 |
| CDY26652 | Canola | cytosol | 78.33 | 81.33 |
| CDX98101 | Canola | nucleus | 79.8 | 81.2 |
| Bra026903.1-P | Field mustard | nucleus | 79.8 | 80.6 |
| CDY30031 | Canola | nucleus | 79.06 | 80.45 |
| CDY16091 | Canola | nucleus | 79.31 | 79.9 |
| VIT_01s0010g02420.t01 | Wine grape | nucleus | 64.29 | 70.54 |
| KRH31419 | Soybean | nucleus | 63.55 | 68.98 |
| KRG97471 | Soybean | nucleus | 63.55 | 68.62 |
| AT3G25990.1 | Thale cress | cytosol | 60.1 | 65.59 |
| Solyc12g077540.1.1 | Tomato | nucleus | 46.06 | 62.13 |
| TraesCS2D01G343200.1 | Wheat | nucleus | 40.39 | 56.36 |
| TraesCS2B01G363200.2 | Wheat | nucleus | 47.04 | 52.91 |
| TraesCS2A01G320100.1 | Wheat | nucleus | 47.04 | 52.91 |
| HORVU2Hr1G084030.2 | Barley | cytosol | 46.55 | 52.35 |
| HORVU2Hr1G046270.1 | Barley | cytosol | 19.95 | 51.59 |
| Zm00001d025720_P002 | Maize | nucleus | 46.8 | 50.13 |
| EES11021 | Sorghum | nucleus | 47.04 | 50.0 |
| GSMUA_Achr5P17240_001 | Banana | nucleus | 24.63 | 45.87 |
| AT2G38250.1 | Thale cress | nucleus | 15.02 | 21.11 |
| AT5G01380.1 | Thale cress | nucleus | 13.55 | 17.03 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.20 | PDB:2EBI | PDB:2JMW | EntrezGene:837905 | ProteinID:AAG09542.1 |
| ProteinID:AEE29018.1 | ProteinID:AEE29019.2 | ProteinID:AEE29020.1 | EMBL:AK228305 | ArrayExpress:AT1G13450 | EnsemblPlantsGene:AT1G13450 |
| RefSeq:AT1G13450 | TAIR:AT1G13450 | RefSeq:AT1G13450-TAIR-G | EnsemblPlants:AT1G13450.1 | TAIR:AT1G13450.1 | Unigene:At.430 |
| EMBL:BX813511 | GO:GO:0000981 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0042802 | GO:GO:0043565 | Symbol:GT-1 | InterPro:IPR017877 |
| EMBL:L36806 | InterPro:Myb-like_dom | RefSeq:NP_001117279.1 | RefSeq:NP_001318993.1 | RefSeq:NP_172802.2 | PFAM:PF13837 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50090 | PANTHER:PTHR45169 | UniProt:Q9FX53 |
| InterPro:SANT/Myb | SMART:SM00717 | UniParc:UPI00000A71FC | SEG:seg | : | : |
Description
GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
Coordinates
chr1:-:4612731..4615259
Molecular Weight (calculated)
46678.4 Da
IEP (calculated)
6.867
GRAVY (calculated)
-0.908
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.