Factsheet for Bra026903.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009045.1-P
Bra019721.1-P
Bra026903.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13450.1	Bra019721.1-P	AT1G13450.1	21245844
AT1G13450.1	Bra026903.1-P	AT1G13450.1	21245844
AT1G13450.1	Bra009045.1-P	AT5G10270.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26652	Canola	cytosol	95.27	97.95
CDY16091	Canola	nucleus	97.26	97.02
Bra019721.1-P	Field mustard	nucleus	82.84	83.25
AT1G13450.1	Thale cress	nucleus	80.6	79.8
KRH31419	Soybean	nucleus	65.67	70.59
KRG97471	Soybean	nucleus	65.67	70.21
VIT_01s0010g02420.t01	Wine grape	nucleus	64.18	69.73
Bra036354.1-P	Field mustard	nucleus	64.18	65.32
Solyc12g077540.1.1	Tomato	nucleus	46.02	61.46
TraesCS2D01G343200.1	Wheat	nucleus	40.8	56.36
TraesCS2B01G363200.2	Wheat	nucleus	48.51	54.02
HORVU2Hr1G084030.2	Barley	cytosol	48.26	53.74
HORVU2Hr1G046270.1	Barley	cytosol	20.9	53.5
TraesCS2A01G320100.1	Wheat	nucleus	47.51	52.91
EES11021	Sorghum	nucleus	47.76	50.26
Zm00001d025720_P002	Maize	nucleus	47.26	50.13
GSMUA_Achr5P17240_001	Banana	nucleus	25.12	46.33
Bra005127.1-P	Field mustard	nucleus	14.43	19.86
Bra000046.1-P	Field mustard	nucleus	14.43	19.73
Bra005688.1-P	Field mustard	nucleus	12.44	17.48
Bra028899.1-P	Field mustard	nucleus	10.45	17.14

Protein Annotations

EnsemblPlants:Bra026903.1	EnsemblPlants:Bra026903.1-P	EnsemblPlantsGene:Bra026903	Gene3D:1.10.10.60	InterPro:IPR017877	InterPro:Myb-like_dom
InterPro:SANT/Myb	PANTHER:PTHR45169	PFAM:PF13837	PFscan:PS50090	SEG:seg	SMART:SM00717
UniParc:UPI0002542EF6	UniProt:M4EDP3	MapMan:15.5.20	:	:	:

Description

AT1G13450 (E=3e-103) | DNA binding protein GT-1

Coordinates

chrA09:+:34214990..34217008

Molecular Weight (calculated)

46122.1 Da

IEP (calculated)

7.308

GRAVY (calculated)

-0.795

Length

402 amino acids

Sequence
(BLAST)

001: MFVSDKPRPI DFYKDDNTTT ARDNMIIDVT TNAPGRDLHP HHHHHHLQPQ QILLGESSGE DHEVKAPKKR AETWVQDETR SLIMFRRGMD GLFNTSKSNK
101: HLWEQISAKM REKGFDRSPT MCTDKWRNLL KEFKKAKHHD RGNRSAKMSY YKEIEEILRE RSKKVTATGQ YSKSSNATPT AKVDSFMQFT DKGFDDPSIS
201: FGSVEANGRP ALNLERRLDH DGHPLAIATV DAVAANGVPP WNWRETPGNG NFFIYVIQAG GDSHGQPFGG RVITVKFGDY TRRIGVDGST EAIKDTIRSA
301: FGLRTRRAFW LEDEDQVVRC LDRDMPLGNY LLHVDDGLAI RVCHYDESNQ LPVHTEEKVF YTEEDYRDFL ARRGWTCLQF DGFRNIENMD DLQPGAVYRG
401: VR

Best Arabidopsis Sequence Match ( AT1G13450.1 )
(BLAST)

001: MFISDKSRPT DFYKDDHHNS STTSTTRDMM IDVLTTTNES VDLQSHHHHN HHNHHLHQSQ PQQQILLGES SGEDHEVKAP KKRAETWVQD ETRSLIMFRR
101: GMDGLFNTSK SNKHLWEQIS SKMREKGFDR SPTMCTDKWR NLLKEFKKAK HHDRGNGSAK MSYYKEIEDI LRERSKKVTP PQYNKSPNTP PTSAKVDSFM
201: QFTDKGFDDT SISFGSVEAN GRPALNLERR LDHDGHPLAI TTAVDAVAAN GVTPWNWRET PGNGDDSHGQ PFGGRVITVK FGDYTRRIGV DGSAEAIKEV
301: IRSAFGLRTR RAFWLEDEDQ IIRCLDRDMP LGNYLLRLDD GLAIRVCHYD ESNQLPVHSE EKIFYTEEDY REFLARQGWS SLQVDGFRNI ENMDDLQPGA
401: VYRGVR

Arabidopsis Description

GT-1Trihelix transcription factor GT-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX53]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.