Factsheet for Bra009045.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001578.1-P
Bra010757.1-P
Bra010927.1-P
Bra019721.1-P
Bra021584.1-P
Bra022254.1-P
Bra026903.1-P
Bra027285.1-P
Bra030056.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10270.1	Bra019721.1-P	AT1G13450.1	12678503
AT5G10270.1	Bra026903.1-P	AT1G13450.1	12678503
AT5G10270.1	Bra010927.1-P	AT1G27630.1	12678503
AT5G10270.1	Bra030056.1-P	AT1G27630.1	12678503
AT5G10270.1	Bra001578.1-P	AT3G15000.1	12678503
AT5G10270.1	Bra021584.1-P	AT3G15000.1	12678503
AT5G10270.1	Bra027285.1-P	AT3G15000.1	12678503
AT5G10270.1	Bra022254.1-P	AT3G17860.1	21798944
AT5G10270.1	Bra010757.1-P	AT4G14300.1	12678503

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69849	Canola	nucleus	100.0	100.0
AT5G10270.1	Thale cress	nucleus	88.02	88.71
Bra031892.1-P	Field mustard	nucleus	85.27	83.78
VIT_07s0141g00280.t01	Wine grape	cytosol	40.08	82.26
Bra028333.1-P	Field mustard	nucleus	79.76	79.92
Zm00001d012392_P001	Maize	cytosol	31.63	78.92
Solyc04g056280.2.1	Tomato	nucleus	74.26	73.83
Bra024341.1-P	Field mustard	cytosol	50.49	64.57
EES15089	Sorghum	cytosol	37.72	59.44
Os08t0453800-00	Rice	endoplasmic reticulum, plasma membrane	34.58	55.0
Bra027966.1-P	Field mustard	nucleus	36.74	33.21
Bra022756.1-P	Field mustard	cytosol	36.74	32.69
Bra040637.1-P	Field mustard	plastid	36.74	32.35
Bra009977.1-P	Field mustard	cytosol, nucleus, plastid	35.56	32.04
Bra035716.1-P	Field mustard	cytosol	35.95	31.55
Bra039466.1-P	Field mustard	plastid	35.36	30.87
Bra030962.1-P	Field mustard	plastid	39.88	30.8
Bra037899.1-P	Field mustard	nucleus	37.33	30.79
Bra028011.1-P	Field mustard	nucleus	37.72	30.72
Bra010213.1-P	Field mustard	nucleus	37.52	30.51
Bra036018.1-P	Field mustard	nucleus	37.13	30.43
Bra016132.1-P	Field mustard	plastid	37.92	30.35
Bra003921.1-P	Field mustard	plastid	36.74	30.06
Bra038097.1-P	Field mustard	plastid	40.27	30.06
Bra027540.1-P	Field mustard	nucleus	37.13	29.58
Bra007973.1-P	Field mustard	nucleus, plastid	37.33	29.41
Bra015920.1-P	Field mustard	cytosol	35.36	28.17
Bra027895.1-P	Field mustard	nucleus	36.35	27.86
Bra030788.1-P	Field mustard	nucleus	34.97	27.55
Bra035472.1-P	Field mustard	nucleus	36.94	26.78
Bra031674.1-P	Field mustard	nucleus	36.15	26.51
Bra028432.1-P	Field mustard	nucleus, plastid	33.4	26.11
Bra016547.1-P	Field mustard	nucleus	37.13	25.47
Bra015260.1-P	Field mustard	mitochondrion, nucleus	36.15	25.45
Bra020008.1-P	Field mustard	nucleus	35.76	24.14
Bra041128.1-P	Field mustard	plastid	24.75	23.6
Bra013662.1-P	Field mustard	nucleus	32.61	23.12
Bra001023.1-P	Field mustard	nucleus	32.61	15.6
Bra039147.1-P	Field mustard	nucleus	32.42	15.25
Os01t0201000-01	Rice	plasma membrane	2.16	8.59

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.1.1.2.3	MapMan:15.3.2.1.1	MapMan:18.4.3.1.3	Gene3D:3.30.200.20	EnsemblPlantsGene:Bra009045
EnsemblPlants:Bra009045.1	EnsemblPlants:Bra009045.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006468	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009615	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0048366	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	UniProt:M4CXU8	PFAM:PF00069	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR24056	PANTHER:PTHR24056:SF240	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112
InterPro:Ser/Thr_kinase_AS	UniParc:UPI00025446D2	SEG:seg	:	:	:

Description

AT5G10270 (E=3e-212) CDKC;1 | CDKC;1 (Cyclin-dependent kinase C;1); kinase

Coordinates

chrA10:+:15013389..15016079

Molecular Weight (calculated)

57352.9 Da

IEP (calculated)

9.273

GRAVY (calculated)

-0.843

Length

509 amino acids

Sequence
(BLAST)

001: MAVADDGKLN IEEHPPLWGS RSVDCFEKLE QIGEGTYGQV YMAKDIKTGE IVALKKIRMD NEKEGFPITA IREIKILKKL HHENVVELKE IVTSPGRDTD
101: DQGKPDNNKY KGGIYMVFEY MDHDLTGLAD RPGLRFTIPQ IKCYMRQLLT GLHYCHAHQI LHRDIKGSNL LIDNEGQLKL ADFGLARMYS QDHSGNLTNR
201: VITLWYRPPE LLLGATKYGP AIDMWSVGCI FAELLYAKPI LPGKNENEQL SKIFELCGSP DENNWPGVSK MPWFNNFKPS RPLKRRVREF FGQYQVFDRH
301: ALELLDKMLV LDPSQRITAK DALDAEYFWT DPLPCDPKSL PTYEASHEFQ TKKKRQEQRQ REEAAKRQKL QHPHQQHSRL PPLQHGGQSH AAAPHWPAHP
401: TNNAPPQVPA GPSHHYYGKP RGPPGPNRYP PSGNQSRGYN QSRGGYSSSG SYHQQGRGAH YVGVGPRGPS GGAYGVGPPN YTQSGQHGGS GRGQNPMGGS
501: RNQQYGWQQ

Best Arabidopsis Sequence Match ( AT5G10270.1 )
(BLAST)

001: MAMASFGQLN LEEPPPIWGS RSVDCFEKLE QIGEGTYGQV YMAKEIKTGE IVALKKIRMD NEREGFPITA IREIKILKKL HHENVIQLKE IVTSPGRDRD
101: DQGKPDNNKY KGGIYMVFEY MDHDLTGLAD RPGLRFTVPQ IKCYMKQLLT GLHYCHVNQV LHRDIKGSNL LIDNEGNLKL ADFGLARSYS HDHTGNLTNR
201: VITLWYRPPE LLLGATKYGP AIDMWSVGCI FAELLHAKPI LPGKNEQEQL NKIFELCGSP DEKLWPGVSK MPWFNNFKPA RPLKRRVREF FRHFDRHALE
301: LLEKMLVLDP AQRISAKDAL DAEYFWTDPL PCDPKSLPTY ESSHEFQTKK KRQQQRQNEE AAKRQKLQHP PLQHSRLPPL QHGGQSHAAP HWPAGPNHPT
401: NNAPPQVPAG PSHNFYGKPR GPPGPNRYPP SGNQSGGYNQ SRGGYSSGSY PPQGRGAPYV AGPRGPSGGP YGVGPPNYTQ GGQYGGSGSS GRGQNQRNQQ
501: YGWQQ

Arabidopsis Description

CDKC-1CDKC [Source:UniProtKB/TrEMBL;Acc:A0A178UJP9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.