Factsheet for Bra010927.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009045.1-P
Bra031892.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27630.1	Bra009045.1-P	AT5G10270.1	12678503
AT1G27630.1	Bra009045.1-P	AT5G10270.1	20706207
AT1G27630.1	Bra031892.1-P	AT5G64960.1	12678503
AT1G27630.1	Bra031892.1-P	AT5G64960.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90099	Canola	nucleus	99.69	99.07
AT1G27630.1	Thale cress	cytosol	87.81	88.64
Bra030056.1-P	Field mustard	cytosol	86.25	88.18
Bra006723.1-P	Field mustard	nucleus	29.69	35.98
Solyc07g032480.2.1	Tomato	nucleus	41.56	32.2
VIT_18s0001g12980.t01	Wine grape	nucleus	43.75	31.67
PGSC0003DMT400044127	Potato	nucleus	41.25	31.13
GSMUA_Achr3P20770_001	Banana	nucleus	38.75	29.67
GSMUA_Achr8P18640_001	Banana	nucleus	38.12	29.47
Bra031514.1-P	Field mustard	cytosol	28.75	29.11
Bra013402.1-P	Field mustard	nucleus	33.12	26.17
Os02t0133000-00	Rice	extracellular	36.25	26.01
Bra037473.1-P	Field mustard	mitochondrion	15.62	23.92
Bra020954.1-P	Field mustard	nucleus	38.75	23.53
Bra021950.1-P	Field mustard	nucleus	40.0	22.9
Bra025087.1-P	Field mustard	nucleus	40.0	22.57
Bra020686.1-P	Field mustard	cytosol	16.88	21.34
KXG29406	Sorghum	cytosol	36.88	21.34
Zm00001d015164_P001	Maize	cytosol	35.94	21.14
Bra020685.1-P	Field mustard	cytosol	12.5	20.51
Os02t0438200-01	Rice	nucleus	35.94	18.25
Zm00001d017392_P009	Maize	cytosol	36.56	17.84
Bra012508.1-P	Field mustard	nucleus	22.5	17.43
Zm00001d051291_P003	Maize	cytosol	36.25	17.24
EES07541	Sorghum	plastid	36.56	16.79
TraesCS6A01G096600.1	Wheat	nucleus	36.56	16.6
TraesCS6B01G125000.1	Wheat	nucleus	36.56	15.52
TraesCS6D01G087700.1	Wheat	nucleus	36.88	14.11
Bra032800.1-P	Field mustard	cytosol	19.69	10.13
HORVU6Hr1G017740.2	Barley	nucleus	27.81	9.79

Protein Annotations

EnsemblPlants:Bra010927.1	EnsemblPlants:Bra010927.1-P	EnsemblPlantsGene:Bra010927	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	PANTHER:PTHR10026	PANTHER:PTHR10026:SF77	PFAM:PF00134	PIRSF:PIRSF028758	SEG:seg
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0002545A55	UniProt:M4D374	MapMan:13.1.1.1.9	:

Description

AT1G27630 (E=5e-155) CYCT1;3 | CYCT1;3 (CYCLIN T 1;3); cyclin-dependent protein kinase

Coordinates

chrA08:-:17163818..17165769

Molecular Weight (calculated)

37300.9 Da

IEP (calculated)

8.705

GRAVY (calculated)

-0.370

Length

320 amino acids

Sequence
(BLAST)

001: MGEEQHPRKR SRQHFEAEET RHISLLKSPR CETAKWYFSK EEIERFSPSR KDGIDLAKES FLRSSYCTFI QRLGMKLHVS QVIIGCAMVM CHRFYMRQSH
101: AKNNWQTIAT SSLFLACKAE DEPCQLSSVV VASYEIIYEW DPSASIRIHQ TEYYHEFKEF ILAGERLLLD TSAFQLLDVE LPYKPLAAAL NRVNAWPDLA
201: TASWNFVHDW LRTTLCLQYK PHVIATATVH LASTFQNGKV GSRRDWWLDF GVTTKLLKEV IQEMCMLIEV DRRRTMPPPP PPRREVAWAI PAPLKPPVHM
301: SRGYPFHSYP LQSYRQPGIW

Best Arabidopsis Sequence Match ( AT1G27630.1 )
(BLAST)

001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW

Arabidopsis Description

CYCT1-3Cyclin-T1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.