Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g032480.2.1 | Tomato | nucleus | 91.75 | 94.19 |
| VIT_18s0001g12980.t01 | Wine grape | nucleus | 48.82 | 46.83 |
| Bra030056.1-P | Field mustard | cytosol | 32.31 | 43.77 |
| CDY03933 | Canola | cytosol | 32.31 | 43.77 |
| CDY60279 | Canola | cytosol | 32.31 | 43.77 |
| GSMUA_Achr3P20770_001 | Banana | nucleus | 41.51 | 42.11 |
| AT1G27630.1 | Thale cress | cytosol | 31.37 | 41.96 |
| CDY11776 | Canola | cytosol | 31.6 | 41.88 |
| Bra010927.1-P | Field mustard | nucleus | 31.13 | 41.25 |
| CDX90099 | Canola | nucleus | 31.13 | 40.99 |
| GSMUA_Achr8P18640_001 | Banana | nucleus | 38.68 | 39.61 |
| PGSC0003DMT400009464 | Potato | cytosol | 19.81 | 34.85 |
| Os02t0133000-00 | Rice | extracellular | 33.02 | 31.39 |
| Os02t0438200-01 | Rice | nucleus | 39.15 | 26.35 |
| Zm00001d017392_P009 | Maize | cytosol | 39.62 | 25.61 |
| Zm00001d051291_P003 | Maize | cytosol | 40.09 | 25.26 |
| PGSC0003DMT400081343 | Potato | nucleus | 23.35 | 24.75 |
| EES07541 | Sorghum | plastid | 40.09 | 24.39 |
| KXG29406 | Sorghum | cytosol | 31.6 | 24.23 |
| Zm00001d015164_P001 | Maize | cytosol | 29.72 | 23.16 |
| PGSC0003DMT400057824 | Potato | nucleus | 22.41 | 21.21 |
| PGSC0003DMT400051796 | Potato | cytosol | 12.26 | 20.8 |
| TraesCS6A01G096600.1 | Wheat | nucleus | 31.6 | 19.01 |
| TraesCS6B01G125000.1 | Wheat | nucleus | 32.08 | 18.04 |
| TraesCS6D01G087700.1 | Wheat | nucleus | 31.6 | 16.03 |
| HORVU6Hr1G017740.2 | Barley | nucleus | 27.83 | 12.98 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:102600355 | MapMan:13.1.1.1.9 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | UniProt:M1BFN1 |
| PFAM:PF00134 | PFAM:PF02984 | EnsemblPlantsGene:PGSC0003DMG400017127 | PGSC:PGSC0003DMG400017127 | EnsemblPlants:PGSC0003DMT400044127 | PIRSF:PIRSF036580 |
| PANTHER:PTHR10026 | PANTHER:PTHR10026:SF77 | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI000295F543 | RefSeq:XP_006367601.1 |
| SEG:seg | : | : | : | : | : |
Description
Cyclin-dependent protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400017127]
Coordinates
chr7:-:17631058..17636043
Molecular Weight (calculated)
48526.0 Da
IEP (calculated)
6.898
GRAVY (calculated)
-0.505
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQQLSENPS SMHIQEKSES YTQRWYFTTE EIEDHSPSRR DGIDYEKESH LRKLYCSFLQ ELGIELKVPQ VTIATAMMLC HRFYMRQSHA KNHWQIVATV
101: SMFLAGKAEE TPRWLSDLVV VAYKLVYKWD PSAPLRIRQK DIYDKEKESV VAGERMLLVT VAFDLNIEHP YKALVGAMKR LEISNNEMVK VAWNFVNDWL
201: RTTLCLQYKP HYVAAGSMFL AAKLLKVKLP AEKGNPWWMQ FDVAPKQLEE VIQKMLQLLE QNQKQVIPST SSKLSELKPV AGKATSSIAE SCISSVSVVA
301: QDSRNMELVE TRGPSTSVTS KFSEKASCNS INTVKEETEH WETSECGSAN SAVEDGVCQP LKNERGKEIC HTVSVSDHNG KFDIDRIKER LKRRKLEQSS
401: MKKSAMYDEI DSEGWIEREL ENLG
101: SMFLAGKAEE TPRWLSDLVV VAYKLVYKWD PSAPLRIRQK DIYDKEKESV VAGERMLLVT VAFDLNIEHP YKALVGAMKR LEISNNEMVK VAWNFVNDWL
201: RTTLCLQYKP HYVAAGSMFL AAKLLKVKLP AEKGNPWWMQ FDVAPKQLEE VIQKMLQLLE QNQKQVIPST SSKLSELKPV AGKATSSIAE SCISSVSVVA
301: QDSRNMELVE TRGPSTSVTS KFSEKASCNS INTVKEETEH WETSECGSAN SAVEDGVCQP LKNERGKEIC HTVSVSDHNG KFDIDRIKER LKRRKLEQSS
401: MKKSAMYDEI DSEGWIEREL ENLG
001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R
Arabidopsis Description
CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.