Factsheet for PGSC0003DMT400057824

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g098350.2.1	Tomato	nucleus	91.96	96.71
Zm00001d033021_P001	Maize	cytosol	33.48	81.97
PGSC0003DMT400009464	Potato	cytosol	41.52	77.18
HORVU6Hr1G056640.2	Barley	plastid	13.62	71.76
KRG92800	Soybean	nucleus	69.42	70.2
Zm00001d019681_P002	Maize	nucleus	33.26	69.95
KRH33999	Soybean	nucleus	69.87	69.87
Bra012508.1-P	Field mustard	nucleus	63.39	68.77
CDY51595	Canola	nucleus	63.17	68.52
CDY03883	Canola	nucleus	63.17	67.87
AT2G26430.1	Thale cress	cytosol	62.72	67.55
TraesCS6A01G331500.1	Wheat	nucleus	60.49	65.78
GSMUA_Achr8P06830_001	Banana	nucleus	65.18	65.62
TraesCS6D01G310800.2	Wheat	nucleus	60.04	65.61
TraesCS6B01G362300.1	Wheat	nucleus	60.04	65.61
Os01t0377500-01	Rice	nucleus	62.05	65.11
KXG30252	Sorghum	nucleus	43.97	60.99
HORVU6Hr1G080430.3	Barley	nucleus	58.26	58.52
VIT_12s0028g00110.t01	Wine grape	nucleus	68.97	56.7
Zm00001d019684_P002	Maize	mitochondrion	33.26	53.41
Zm00001d033023_P001	Maize	cytosol	21.65	39.43
CDY27590	Canola	cytosol	45.98	33.12
Bra032800.1-P	Field mustard	cytosol	45.76	32.96
CDX84949	Canola	cytosol	18.53	23.65
PGSC0003DMT400044127	Potato	nucleus	21.21	22.41
PGSC0003DMT400051796	Potato	cytosol	11.16	20.0
PGSC0003DMT400081343	Potato	nucleus	15.85	17.75

Protein Annotations

EnsemblPlants:PGSC0003DMT400057824	EnsemblPlantsGene:PGSC0003DMG400022453	EntrezGene:102586704	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	ncoils:Coil	PANTHER:PTHR10026	PANTHER:PTHR10026:SF100	PFAM:PF00134	PGSC:PGSC0003DMG400022453
PIRSF:PIRSF036580	SEG:seg	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0002958D0F	UniProt:M1C1R0
MapMan:13.1.1.1.8	:	:	:	:	:

Description

Cyclin-L2 [Source:PGSC_GENE;Acc:PGSC0003DMG400022453]

Coordinates

chr1:-:75942579..75945805

Molecular Weight (calculated)

51918.4 Da

IEP (calculated)

8.470

GRAVY (calculated)

-0.874

Length

448 amino acids

Sequence
(BLAST)

001: MIYTAIDTFY LAEEQLIDSP SRKDGIDDVT ETALRIYGCD LVQECGIMLR LPQAVMATGQ VLFHRFYCKK SFARFNVKRV AASCVWLASK LEESPRKARQ
101: VLVVFHRMEC RRENLPIEHL DTSSKKYIDL KADLIRTERH LLKEMGFICH VEHPHKFISN YLATLETPAE LRQEAWNLAN DSLRTTLCVR FKSEVVACGV
201: VYAAARRFQV PLPENPPWWK AFDADKAGID EVCRVLAHLY SLPKAKYIPV CKEGGSFATS NRSKDSPSLP VSKEGLLDAP PVNEDTEEVA KEAVTKAVLD
301: KLKDSKKSDE DSKNMPSEGE SKEEPGRTDH RIDAGGEKNK ERERDRGRDR ERERDKERLK SRERDRGRES DRERERDDFE REREKSKERS HRSRDKVSSM
401: SNWLVFLLCL TQADLNIAGH LEKPKHHSSR DRDYQSYSSR EKDRRRHH

Best Arabidopsis Sequence Match ( AT2G26430.1 )
(BLAST)

001: MIYTAIDNFY LSDEQLKASP SRKDGIDETT EISLRIYGCD LIQEGGILLK LPQAVMATGQ VLFQRFYCKK SLAKFDVKIV AASCVWLASK LEENPKKARQ
101: VIIVFHRMEC RRENLPLEHL DMYAKKFSEL KVELSRTERH ILKEMGFVCH VEHPHKFISN YLATLETPPE LRQEAWNLAN DSLRTTLCVR FRSEVVACGV
201: VYAAARRFQV PLPENPPWWK AFDADKSSID EVCRVLAHLY SLPKAQYISV CKDGKPFTFS SRSGNSQGQS ATKDLLPGAG EAVDTKCTAG SANNDLKDGM
301: VTTPHEKATD SKKSGTESNS QPIVGDSSYE RSKVGDRERE SDREKERGRE RDRGRSHRGR DSDRDSDRER DKLKDRSHHR SRDRLKDSGG HSDKSRHHSS
401: RDRDYRDSSK DRRRHH

Arabidopsis Description

CYCL1-1Cyclin-L1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWV3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.