Factsheet for PGSC0003DMT400081343

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g075760.2.1	Tomato	nucleus	88.5	96.2
VIT_05s0020g03070.t01	Wine grape	endoplasmic reticulum, extracellular	13.25	60.23
KRG91263	Soybean	nucleus	53.5	57.07
KRH35545	Soybean	nucleus	53.0	56.99
KRH27619	Soybean	cytosol	48.25	51.88
GSMUA_Achr8P00390_001	Banana	mitochondrion	37.0	43.53
TraesCS3B01G227700.2	Wheat	nucleus	38.5	43.26
TraesCS3D01G199600.2	Wheat	nucleus	38.5	43.26
TraesCS3A01G196600.1	Wheat	nucleus	37.75	42.42
HORVU3Hr1G059980.2	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	38.25	39.84
Zm00001d040936_P002	Maize	plastid	31.5	38.41
OQU86869	Sorghum	cytosol, nucleus, plastid	29.0	36.48
PGSC0003DMT400009464	Potato	cytosol	16.75	27.8
PGSC0003DMT400044127	Potato	nucleus	24.75	23.35
PGSC0003DMT400051796	Potato	cytosol	13.0	20.8
PGSC0003DMT400057824	Potato	nucleus	17.75	15.85

Protein Annotations

EnsemblPlants:PGSC0003DMT400081343	EnsemblPlantsGene:PGSC0003DMG401031803	EntrezGene:102590048	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	PANTHER:PTHR10026	PANTHER:PTHR10026:SF67	PFAM:PF00134	PGSC:PGSC0003DMG401031803	PIRSF:PIRSF028758
RefSeq:XP_006359904.1	SEG:seg	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI000296B064	UniProt:M1D4M0
MapMan:13.1.1.1.9	:	:	:	:	:

Description

Cyclin-L1 [Source:PGSC_GENE;Acc:PGSC0003DMG401031803]

Coordinates

chr9:+:53195403..53202547

Molecular Weight (calculated)

45563.4 Da

IEP (calculated)

7.555

GRAVY (calculated)

-0.536

Length

400 amino acids

Sequence
(BLAST)

001: MALAQTYYSQ GGPFRGDSRS FYGRNQSRGM VHSSAYNNYN TVDTHLFNSN SSHDVGRNFS EYSYSYDNLI KPEAEPSSKR RKCSTSGWES TGRYSQAPNA
101: CKDVPSKQQR TCYNVPLRNS RAYDDAYPTR NNNSATTTTT ARPRSDASAP TCSKRDRSWL EDTETDNIFM SKEEIEKCSP SRKDGIDAMH EAHLRYSYCA
201: FLQNLGIRLD LPQTTIGTAM VLCHRFFVRQ SHACHDRFLI ATAALFLAAK SEETARPLNN VLKASCEIFH KQDLAVLSYF LPVDWFEQYR ERITEAEQML
301: LTTLNFELTV QHPYESLTST LEKLGLSETV LVNLALHLVS EGLRSSLWLQ FKPYQIAAGA AYLASKFLNM DFASHHSVWK EFQTPPNVLR DVAQQLMELF

Best Arabidopsis Sequence Match ( AT4G19600.1 )
(BLAST)

001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R

Arabidopsis Description

CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.