Factsheet for Solyc09g075760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081343	Potato	nucleus	96.2	88.5
VIT_05s0020g03070.t01	Wine grape	endoplasmic reticulum, extracellular	14.4	60.23
KRH35545	Soybean	nucleus	57.07	56.45
KRG91263	Soybean	nucleus	57.07	56.0
KRH27619	Soybean	cytosol	50.82	50.27
GSMUA_Achr8P00390_001	Banana	mitochondrion	39.67	42.94
TraesCS3B01G227700.2	Wheat	nucleus	41.3	42.7
TraesCS3D01G199600.2	Wheat	nucleus	41.3	42.7
TraesCS3A01G196600.1	Wheat	nucleus	40.76	42.13
HORVU3Hr1G059980.2	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	41.03	39.32
Zm00001d040936_P002	Maize	plastid	34.24	38.41
OQU86869	Sorghum	cytosol, nucleus, plastid	31.25	36.16
Solyc07g032480.2.1	Tomato	nucleus	26.36	23.49
Solyc06g083260.2.1	Tomato	cytosol, nucleus	14.13	20.8
Solyc10g078180.1.1	Tomato	nucleus	29.89	17.71
Solyc01g098350.2.1	Tomato	nucleus	18.75	16.2

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.9	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N	GO:GO:0000307
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016538	GO:GO:0019538	GO:GO:0030234	GO:GO:0045737	GO:GO:0045944	GO:GO:1901409
UniProt:K4CVF3	PFAM:PF00134	PIRSF:PIRSF028758	PANTHER:PTHR10026	PANTHER:PTHR10026:SF67	SMART:SM00385
SUPFAM:SSF47954	EnsemblPlantsGene:Solyc09g075760.2	EnsemblPlants:Solyc09g075760.2.1	UniParc:UPI000276BD5B	SEG:seg	:

Description

No Description!

Coordinates

chr9:+:67382603..67388353

Molecular Weight (calculated)

42035.3 Da

IEP (calculated)

6.977

GRAVY (calculated)

-0.470

Length

368 amino acids

Sequence
(BLAST)

001: MVHSSAYNNY NTVDTHFFNS NSSHDVGRNF SEYSYGYDNL IKPEAEPSSK RRRCSTSGWE SSGRYSQAPY ACNDVPSKRQ STCYNVPLRN SRAYDDAYPV
101: RNNNSATTSK PRSDASAPTC SKRDRSWLED TETDNIFMSK EEIEKCSPSR KDGIDAMHEA HLRYSYCAFL QNLGIRLDLP QTTIGTAMVL CHRFFVRRSH
201: ACHDRFLIAT AALFLAAKSE ETARPLNNVL KASCEIFHKQ DLAVLSYFLP VDWFEQYRER ITEAEQMILT TLNFELTVQH PYESLTSTLE KLGLSETVLV
301: NLALHLVSEG LRSSLWLQFK PYQIAAGAAY LASKFLNMDF ASHHSVWKEF QTSPNVLRDV AQQLMELF

Best Arabidopsis Sequence Match ( AT4G19600.1 )
(BLAST)

001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R

Arabidopsis Description

CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.