Factsheet for Solyc10g078180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	23.03	88.82
VIT_19s0027g01670.t01	Wine grape	nucleus	71.18	70.95
Zm00001d027790_P001	Maize	cytosol	29.95	68.89
EES11326	Sorghum	nucleus	51.37	65.1
Zm00001d026030_P014	Maize	nucleus	50.72	64.29
HORVU4Hr1G021250.6	Barley	nucleus	49.11	63.67
TraesCS4A01G199300.1	Wheat	nucleus	48.47	63.64
TraesCS2A01G323500.1	Wheat	nucleus	49.76	63.45
TraesCS2B01G358600.1	Wheat	nucleus	49.6	63.24
HORVU2Hr1G083340.2	Barley	nucleus	49.44	63.17
TraesCS4D01G113600.1	Wheat	nucleus	48.47	62.71
KRH43745	Soybean	nucleus	61.67	62.68
TraesCS2D01G339400.1	Wheat	nucleus	49.76	62.55
TraesCS4B01G116000.1	Wheat	nucleus	47.99	62.21
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	38.16	62.2
KRH13708	Soybean	nucleus	60.39	61.88
Zm00001d020158_P001	Maize	nucleus	39.77	60.1
EER88086	Sorghum	nucleus	45.89	59.87
Os12t0485400-01	Rice	nucleus	50.56	57.83
TraesCS4B01G115800.1	Wheat	nucleus	38.49	57.45
TraesCS4A01G199600.1	Wheat	nucleus	38.16	56.97
TraesCS4D01G113400.1	Wheat	nucleus	40.58	56.76
Zm00001d027376_P002	Maize	nucleus, plastid	50.4	56.09
TraesCS5A01G103900.2	Wheat	nucleus	47.02	55.51
HORVU5Hr1G038970.16	Barley	nucleus	48.47	55.23
TraesCS5D01G121900.1	Wheat	nucleus	48.47	53.75
TraesCS5B01G112100.2	Wheat	nucleus	49.6	52.92
GSMUA_Achr6P04070_001	Banana	nucleus	40.9	52.26
OQU93178	Sorghum	nucleus	44.44	47.26
HORVU4Hr1G021220.13	Barley	cytosol	32.37	45.68
KXG23456	Sorghum	nucleus	41.55	43.88
Solyc07g032480.2.1	Tomato	nucleus	26.89	40.44
Solyc09g075760.2.1	Tomato	nucleus	17.71	29.89
Solyc06g083260.2.1	Tomato	cytosol, nucleus	10.47	26.0
Solyc01g098350.2.1	Tomato	nucleus	16.43	23.94

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2	ncoils:Coil	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	GO:GO:0000307	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016538	GO:GO:0019538	GO:GO:0030234	GO:GO:0045737
GO:GO:0045944	GO:GO:1901409	UniProt:K4D261	PFAM:PF00134	PIRSF:PIRSF036580	PANTHER:PTHR10026
PANTHER:PTHR10026:SF103	SMART:SM00385	SUPFAM:SSF47954	EnsemblPlantsGene:Solyc10g078180.1	EnsemblPlants:Solyc10g078180.1.1	UniParc:UPI000276A0AF
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:60038374..60046341

Molecular Weight (calculated)

70319.2 Da

IEP (calculated)

6.780

GRAVY (calculated)

-1.141

Length

621 amino acids

Sequence
(BLAST)

001: MAGLMTGDPS THHEAYEGGS FRASQERPDE NGGRWYLSRK EIEENSPSRL NGIDLKKETY LRKSYCTFLQ DLGMRLKVPQ VTIATAIIFC HRFFLRQSHS
101: RNDRRTVATV CMFLAGKVEE TPRPLKDVIL VSYEIIHKKD SEAIQRIKQK EVYEQQKELI LSGERVVLAT LAFDLNVHHP YKPLVEAIKK FKVAQNALAQ
201: VAWNFVNDGL RTSLCLQFKP HHIAAGAIFL AAKFLKVKLP SDGEKVWWQE FDVTPRQLEE VSNQMLELYE QNRVPPQASE AEGSAGGNQR PSGKSSAAQE
301: EHGANNSNSV GGGANTNAGS SNPASSRETP DQPYADNHSG LTRTAQNSNN DYGSAEHNFS DGIGDGEMND RQTHEREQVS YQGSTAEVQS RSRYGSESNT
401: EDDQEGNTRK SEPRHKGESK EKYHGRALEN MDDAVGQSPQ EVRKIDKDKV KAAVENKVKA ALEKRRKAQG DVTKKTDVMD DDDLIERELE DGIELSAGNE
501: KNKRERKESW SKPSNRPEHE NTYHTKLQDE AGDGHHQGSK WKSSRREELD YVEEGELEPY DDADKGYRSP KSNSRKRKAG SPSDKPMEGK RHEYFPDDRN
601: RPGRLDYSER DHKRHMQENH A

Best Arabidopsis Sequence Match ( AT5G45190.1 )
(BLAST)

001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.