Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G121900.1 | Wheat | nucleus | 97.72 | 91.79 |
| HORVU5Hr1G038970.16 | Barley | nucleus | 92.4 | 89.17 |
| TraesCS5B01G112100.2 | Wheat | nucleus | 96.96 | 87.63 |
| Zm00001d027790_P001 | Maize | cytosol | 37.07 | 72.22 |
| Os12t0485400-01 | Rice | nucleus | 72.05 | 69.8 |
| Zm00001d020158_P001 | Maize | nucleus | 52.66 | 67.4 |
| TraesCS2A01G323500.1 | Wheat | nucleus | 58.94 | 63.66 |
| TraesCS4A01G199300.1 | Wheat | nucleus | 57.22 | 63.64 |
| TraesCS4A01G199600.1 | Wheat | nucleus | 46.01 | 58.17 |
| GSMUA_Achr6P30140_001 | Banana | nucleus | 55.51 | 57.59 |
| OQU93178 | Sorghum | nucleus | 61.79 | 55.65 |
| GSMUA_Achr6P31620_001 | Banana | cytosol | 53.8 | 55.17 |
| AT1G35440.1 | Thale cress | cytosol | 24.52 | 52.23 |
| KXG23456 | Sorghum | nucleus | 57.6 | 51.53 |
| KRH50485 | Soybean | nucleus | 54.94 | 50.97 |
| CDX76472 | Canola | nucleus | 51.14 | 50.85 |
| CDY09329 | Canola | nucleus | 51.33 | 50.85 |
| Bra020954.1-P | Field mustard | nucleus | 50.76 | 50.66 |
| KRG89442 | Soybean | nucleus | 54.56 | 50.53 |
| CDY26395 | Canola | nucleus | 50.38 | 50.38 |
| AT4G19600.1 | Thale cress | nucleus | 51.71 | 50.28 |
| KRG89447 | Soybean | nucleus | 53.61 | 49.74 |
| CDX71123 | Canola | nucleus | 24.9 | 49.62 |
| CDX88692 | Canola | nucleus | 24.52 | 48.86 |
| CDX99359 | Canola | nucleus | 49.43 | 48.69 |
| VIT_00s0125g00270.t01 | Wine grape | nucleus | 54.18 | 48.63 |
| Bra006723.1-P | Field mustard | nucleus | 24.33 | 48.48 |
| VIT_19s0027g01670.t01 | Wine grape | nucleus | 57.03 | 48.15 |
| Bra025087.1-P | Field mustard | nucleus | 51.52 | 47.8 |
| CDX82583 | Canola | nucleus | 51.14 | 47.44 |
| Bra021950.1-P | Field mustard | nucleus | 50.19 | 47.23 |
| Solyc10g078180.1.1 | Tomato | nucleus | 55.51 | 47.02 |
| KRH13708 | Soybean | nucleus | 53.99 | 46.86 |
| CDY39416 | Canola | nucleus | 51.52 | 46.8 |
| KRH43745 | Soybean | nucleus | 54.18 | 46.64 |
| AT5G45190.2 | Thale cress | nucleus | 51.9 | 46.27 |
| CDY65933 | Canola | nucleus | 49.81 | 46.13 |
| CDY24526 | Canola | cytosol, nucleus, peroxisome | 26.81 | 44.62 |
| Bra031514.1-P | Field mustard | cytosol | 26.62 | 44.3 |
| CDY54138 | Canola | cytosol | 26.62 | 44.3 |
| CDX99363 | Canola | nucleus | 33.84 | 44.17 |
| Bra013402.1-P | Field mustard | nucleus | 33.27 | 43.21 |
| CDX78940 | Canola | nucleus | 33.27 | 43.21 |
| AT4G19560.1 | Thale cress | nucleus | 36.69 | 41.96 |
| TraesCS3A01G196600.1 | Wheat | nucleus | 19.58 | 28.93 |
| TraesCS5A01G057600.1 | Wheat | mitochondrion | 11.03 | 28.86 |
| TraesCS5A01G282200.1 | Wheat | peroxisome | 13.31 | 27.13 |
| TraesCS6A01G349600.1 | Wheat | peroxisome | 12.93 | 26.46 |
| TraesCS6A01G331500.1 | Wheat | nucleus | 17.87 | 22.82 |
| TraesCS6A01G096600.1 | Wheat | nucleus | 27.0 | 20.14 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G103900.2 | EnsemblPlantsGene:TraesCS5A01G103900 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| ncoils:Coil | PANTHER:PTHR10026 | PANTHER:PTHR10026:SF103 | PFAM:PF00134 | PIRSF:PIRSF036580 | SEG:seg |
| SMART:SM00385 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.9 | MapMan:15.3.2.1.2 | : |
Description
No Description!
Coordinates
chr5A:-:165328007..165335472
Molecular Weight (calculated)
58864.2 Da
IEP (calculated)
7.123
GRAVY (calculated)
-0.839
Length
526 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMLPSDLSH HGIVENSPYR ITKSGNKEAG KLSASWYFSR KEIEENSPSK RDGIDLKKET YLRKSYCTYL QDLGMRLKVP QVTIATSIVF CHRFYLRQSH
101: AKNDRRTIAT VCMFLAGKVE ETPRPLKDVI LVSYELIHKK DPAAGQKIKQ REVYDRQKEL ILLGERVVLA TLGFDLNVHH PYKPLVETIK KFKITHNALP
201: QIAWNFVNDG LRTSLCLQFK PHHIAAGALF LAGKFLKVKF LPDDGEKAWY QEFDVTPRQL EEVSNQMLEL YEQNRVVQSQ PTNENEAEGS SAGVPNQRIS
301: VKAEANSEEP PVMHHPASKQ SDSNPSTSTG VPIHNGAEHS KPHKQIGSQK SLQNDNGGHE NNKTSCQSGG RVDTSTKDGL HDGTKSLPRS SRPSDKSGIP
401: TEEKPLPSHA SSSESRDGNL SNSGDPSVSS SMMDAMNKID KDKVKAALEK RRKLKGDVAR KVHVMDDDDL LERELEHDVE LAVEDEKIKQ ERNDCSMHQE
501: DHRNADGVAE NGDNNGDQNV PETERG
101: AKNDRRTIAT VCMFLAGKVE ETPRPLKDVI LVSYELIHKK DPAAGQKIKQ REVYDRQKEL ILLGERVVLA TLGFDLNVHH PYKPLVETIK KFKITHNALP
201: QIAWNFVNDG LRTSLCLQFK PHHIAAGALF LAGKFLKVKF LPDDGEKAWY QEFDVTPRQL EEVSNQMLEL YEQNRVVQSQ PTNENEAEGS SAGVPNQRIS
301: VKAEANSEEP PVMHHPASKQ SDSNPSTSTG VPIHNGAEHS KPHKQIGSQK SLQNDNGGHE NNKTSCQSGG RVDTSTKDGL HDGTKSLPRS SRPSDKSGIP
401: TEEKPLPSHA SSSESRDGNL SNSGDPSVSS SMMDAMNKID KDKVKAALEK RRKLKGDVAR KVHVMDDDDL LERELEHDVE LAVEDEKIKQ ERNDCSMHQE
501: DHRNADGVAE NGDNNGDQNV PETERG
001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS
Arabidopsis Description
Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.