Factsheet for TraesCS5A01G057600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G349600.1	Wheat	peroxisome	87.06	68.09
TraesCS5A01G282200.1	Wheat	peroxisome	85.07	66.28
GSMUA_Achr7P02730_001	Banana	cytosol	75.62	57.79
Bra037473.1-P	Field mustard	mitochondrion	59.7	57.42
KRH46635	Soybean	cytosol	71.14	56.52
KRG99632	Soybean	cytosol	70.15	55.73
VIT_00s0360g00050.t01	Wine grape	cytosol	67.16	53.78
PGSC0003DMT400051796	Potato	cytosol	66.67	53.6
Solyc06g083260.2.1	Tomato	cytosol, nucleus	66.67	53.6
Bra020685.1-P	Field mustard	cytosol	47.76	49.23
CDY05665	Canola	endoplasmic reticulum, extracellular	26.37	48.62
AT5G48640.1	Thale cress	cytosol	60.7	48.22
AT5G48630.2	Thale cress	cytosol, nucleus, plastid	60.7	47.66
CDY66082	Canola	cytosol	59.7	47.62
CDX86291	Canola	cytosol	59.7	47.62
CDY51053	Canola	cytosol	59.2	47.04
Bra020686.1-P	Field mustard	cytosol	59.2	47.04
CDY51052	Canola	cytosol	58.71	47.01
CDX85352	Canola	cytosol	58.71	46.83
CDY69301	Canola	cytosol	58.71	46.64
TraesCS4A01G199600.1	Wheat	nucleus	26.87	12.98
TraesCS4A01G199300.1	Wheat	nucleus	27.86	11.84
TraesCS3A01G196600.1	Wheat	nucleus	20.4	11.52
TraesCS6A01G331500.1	Wheat	nucleus	23.38	11.41
TraesCS2A01G323500.1	Wheat	nucleus	27.36	11.29
TraesCS5A01G103900.2	Wheat	nucleus	28.86	11.03
TraesCS6A01G096600.1	Wheat	nucleus	21.89	6.24

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.3	MapMan:15.3.3.4.4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:CyclinC/Ssn8
InterPro:Cyclin_N	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0016538	GO:GO:0016592	GO:GO:0030234	PFAM:PF00134	PIRSF:PIRSF028758
PANTHER:PTHR10026	PANTHER:PTHR10026:SF7	SMART:SM00385	SUPFAM:SSF47954	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5A01G057600
EnsemblPlants:TraesCS5A01G057600.1	TIGR:cd00043	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5A:+:55158499..55161138

Molecular Weight (calculated)

23422.0 Da

IEP (calculated)

5.717

GRAVY (calculated)

0.248

Length

201 amino acids

Sequence
(BLAST)

001: MISDIWRLAQ QVKVRQRVIV TAITYFRCVC TRKSMAEYDP CLVAPACLYL ASKVEESTVQ TRHLVFYIKM MCVVTGSDDK YRFEFKYILE MEMKLLEALN
101: YYLVVLHPYC PLLLLLQDAG ITDLTQFAWG LVNDTYKMDL ILIYPPYMSA LACIYIASVL KGKDTTSWFE ELHVDMNILK NISMEILDLY DTYKIDPNRG
201: L

Best Arabidopsis Sequence Match ( AT5G48630.1 )
(BLAST)

001: MASNFWTSTH YKELKDPEEV NVVHPLDAQR GISVEDFRLI KLHMSNYISK LAQHIKIRQR VVATAVTYMR RVYTRKSLTE YEPRLVAPTC LYLACKAEES
101: VVHAKLLVFY MKKLYADEKF RYEIKDILEM EMKVLEALNF YLVVFHPYRS LPEFLQDSGI NDTSMTHLTW GLVNDTYRMD LILIHPPFLI TLACIYIASV
201: HKEKDIKTWF EELSVDMNIV KNIAMEILDF YENHRLFTEE RVHAAFNKLA TNP

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4K359]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.