Factsheet for GSMUA_Achr7P02730_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97007	Sorghum	nucleus	80.23	82.1
TraesCS6D01G332100.1	Wheat	peroxisome	79.09	80.93
Os09t0504400-01	Rice	nucleus	79.09	80.93
TraesCS6A01G349600.1	Wheat	peroxisome	79.09	80.93
TraesCS6B01G382700.1	Wheat	peroxisome	78.71	80.54
TraesCS5D01G289300.2	Wheat	peroxisome	77.19	78.68
TraesCS5B01G281600.1	Wheat	peroxisome	77.19	78.68
TraesCS5A01G282200.1	Wheat	peroxisome	76.43	77.91
KRH46635	Soybean	cytosol	73.76	76.68
KRG99632	Soybean	cytosol	73.0	75.89
TraesCS5A01G057600.1	Wheat	mitochondrion	57.79	75.62
VIT_00s0360g00050.t01	Wine grape	cytosol	71.86	75.3
PGSC0003DMT400051796	Potato	cytosol	69.96	73.6
Solyc06g083260.2.1	Tomato	cytosol, nucleus	69.96	73.6
HORVU6Hr1G083890.3	Barley	plastid	78.33	67.99
AT5G48640.1	Thale cress	cytosol	65.4	67.98
CDY69301	Canola	cytosol	64.64	67.19
CDY51053	Canola	cytosol	64.64	67.19
Bra020686.1-P	Field mustard	cytosol	64.64	67.19
CDX86291	Canola	cytosol	63.88	66.67
Zm00001d021031_P002	Maize	endoplasmic reticulum, vacuole	79.09	66.03
AT5G48630.2	Thale cress	cytosol, nucleus, plastid	64.26	66.02
CDY66082	Canola	cytosol	63.12	65.87
CDY51052	Canola	cytosol	62.74	65.74
Bra037473.1-P	Field mustard	mitochondrion	52.09	65.55
CDX85352	Canola	cytosol	62.74	65.48
Bra020685.1-P	Field mustard	cytosol	45.63	61.54
CDY05665	Canola	endoplasmic reticulum, extracellular	21.67	52.29
GSMUA_Achr3P20770_001	Banana	nucleus	24.33	15.31
GSMUA_Achr6P30140_001	Banana	nucleus	29.28	15.19
GSMUA_Achr6P31620_001	Banana	cytosol	28.9	14.81
GSMUA_Achr8P18640_001	Banana	nucleus	22.05	14.01
GSMUA_Achr6P04070_001	Banana	nucleus	25.86	13.99
GSMUA_Achr8P00390_001	Banana	mitochondrion	16.35	12.65
GSMUA_Achr8P06830_001	Banana	nucleus	18.25	10.79

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.3	MapMan:15.3.3.4.4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:CyclinC/Ssn8
InterPro:Cyclin_N	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016538
GO:GO:0016592	GO:GO:0019538	GO:GO:0030234	GO:GO:0045859	EnsemblPlantsGene:GSMUA_Achr7G02730_001	EnsemblPlants:GSMUA_Achr7P02730_001
EnsemblPlants:GSMUA_Achr7T02730_001	UniProt:M0TE63	PFAM:PF00134	PIRSF:PIRSF028758	PANTHER:PTHR10026	PANTHER:PTHR10026:SF7
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI000294A095	:	:	:

Description

Cyclin-C1-1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G02730_001]

Coordinates

chr7:+:2202182..2211294

Molecular Weight (calculated)

30677.8 Da

IEP (calculated)

7.944

GRAVY (calculated)

0.011

Length

263 amino acids

Sequence
(BLAST)

001: MAANFWTSSH YKQLLDPDKV DVVQRLDKEK GVTLEEFRLI KIHMSLQIWK LALQVKVRQR VIATAITYLR RVYTRKSMTE YDPRLVAPTC LYLASKVEES
101: TVQARLLVFY IKKMYAGATS SDEKYRFEIK DILEMEMKVL EALDYYLVVF HPYRPLLQLL QDAGITDLTQ VAWGLVNDTY KMDLILIHPP HMIALACIYI
201: ACVLKDKDLT TWFEELRVDM NIVKNISMEI LEFFEYCRLD SKGNILIPED RINAALNKVA AKP

Best Arabidopsis Sequence Match ( AT5G48630.1 )
(BLAST)

001: MASNFWTSTH YKELKDPEEV NVVHPLDAQR GISVEDFRLI KLHMSNYISK LAQHIKIRQR VVATAVTYMR RVYTRKSLTE YEPRLVAPTC LYLACKAEES
101: VVHAKLLVFY MKKLYADEKF RYEIKDILEM EMKVLEALNF YLVVFHPYRS LPEFLQDSGI NDTSMTHLTW GLVNDTYRMD LILIHPPFLI TLACIYIASV
201: HKEKDIKTWF EELSVDMNIV KNIAMEILDF YENHRLFTEE RVHAAFNKLA TNP

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4K359]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.