Factsheet for TraesCS5D01G289300.2

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	nucleus, peroxisome
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G281600.1	Wheat	peroxisome	100.0	100.0
TraesCS5A01G282200.1	Wheat	peroxisome	99.22	99.22
TraesCS6D01G332100.1	Wheat	peroxisome	91.86	92.22
EER97007	Sorghum	nucleus	89.92	90.27
Os09t0504400-01	Rice	nucleus	87.98	88.33
GSMUA_Achr7P02730_001	Banana	cytosol	78.68	77.19
KRH46635	Soybean	cytosol	73.64	75.1
KRG99632	Soybean	cytosol	72.87	74.31
Zm00001d021031_P002	Maize	endoplasmic reticulum, vacuole	90.31	73.97
PGSC0003DMT400051796	Potato	cytosol	69.38	71.6
Solyc06g083260.2.1	Tomato	cytosol, nucleus	69.38	71.6
VIT_00s0360g00050.t01	Wine grape	cytosol	68.6	70.52
Bra037473.1-P	Field mustard	mitochondrion	55.04	67.94
CDX86291	Canola	cytosol	66.28	67.86
AT5G48640.1	Thale cress	cytosol	66.28	67.59
CDX85352	Canola	cytosol	65.12	66.67
CDY66082	Canola	cytosol	63.95	65.48
CDY51052	Canola	cytosol	63.18	64.94
AT5G48630.2	Thale cress	cytosol, nucleus, plastid	62.4	62.89
Bra020686.1-P	Field mustard	cytosol	61.63	62.85
CDY69301	Canola	cytosol	61.63	62.85
CDY51053	Canola	cytosol	61.63	62.85
Bra020685.1-P	Field mustard	cytosol	47.29	62.56
CDY05665	Canola	endoplasmic reticulum, extracellular	20.93	49.54
TraesCS3D01G199600.2	Wheat	nucleus	21.32	15.45
TraesCS4D01G113600.1	Wheat	nucleus	25.97	13.96
TraesCS4D01G113400.1	Wheat	nucleus	23.26	13.51
TraesCS2D01G339400.1	Wheat	nucleus	25.58	13.36
TraesCS6D01G310800.2	Wheat	nucleus	20.93	13.17
TraesCS5D01G121900.1	Wheat	nucleus	26.74	12.32
TraesCS6D01G087700.1	Wheat	nucleus	21.32	6.58

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.3	MapMan:15.3.3.4.4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:CyclinC/Ssn8
InterPro:Cyclin_N	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0016538	GO:GO:0016592	GO:GO:0030234	PFAM:PF00134	PIRSF:PIRSF028758
PANTHER:PTHR10026	PANTHER:PTHR10026:SF7	SMART:SM00385	SUPFAM:SSF47954	EnsemblPlantsGene:TraesCS5D01G289300	EnsemblPlants:TraesCS5D01G289300.2
TIGR:cd00043	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:388097130..388100697

Molecular Weight (calculated)

29974.5 Da

IEP (calculated)

6.518

GRAVY (calculated)

-0.106

Length

258 amino acids

Sequence
(BLAST)

001: MAANFWASSH SKQLLDPEDV DVVPAADRER GITTEEFRLV KIHMSSHIWR LAQQVKVRQR VIATAITYFR RVYTRKSMSE YDPRLVAPAC LYLASKVEES
101: TVQARLLVFY IKKMCAGSDD KYRFEIKDIL EMEMKLLEAL DYYLVVYHPY RPLLHLLQDA GVTDLTQFAW GLVNDTYKMD LILVQPPYMI ALACIYIASV
201: LKDKDTTSWF EELHVDMNIV KNISMEILDF YETYKVDPQR GLSDEKISPI MNKLPAKA

Best Arabidopsis Sequence Match ( AT5G48630.1 )
(BLAST)

001: MASNFWTSTH YKELKDPEEV NVVHPLDAQR GISVEDFRLI KLHMSNYISK LAQHIKIRQR VVATAVTYMR RVYTRKSLTE YEPRLVAPTC LYLACKAEES
101: VVHAKLLVFY MKKLYADEKF RYEIKDILEM EMKVLEALNF YLVVFHPYRS LPEFLQDSGI NDTSMTHLTW GLVNDTYRMD LILIHPPFLI TLACIYIASV
201: HKEKDIKTWF EELSVDMNIV KNIAMEILDF YENHRLFTEE RVHAAFNKLA TNP

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4K359]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.