Skip to main content
crop-pal logo
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytoskeleton 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY51052 Canola cytosol 97.95 76.1
CDY66082 Canola cytosol 97.95 75.79
AT5G48640.1 Thale cress cytosol 90.77 69.96
Bra037473.1-P Field mustard mitochondrion 74.87 69.86
KRG99632 Soybean cytosol 71.28 54.94
KRH46635 Soybean cytosol 70.77 54.55
Bra020686.1-P Field mustard cytosol 69.74 53.75
PGSC0003DMT400051796 Potato cytosol 68.72 53.6
Solyc06g083260.2.1 Tomato cytosol, nucleus 68.72 53.6
VIT_00s0360g00050.t01 Wine grape cytosol 66.15 51.39
TraesCS5A01G057600.1 Wheat mitochondrion 49.23 47.76
TraesCS5B01G281600.1 Wheat peroxisome 62.56 47.29
TraesCS5D01G289300.2 Wheat peroxisome 62.56 47.29
EER97007 Sorghum nucleus 62.05 47.08
Os09t0504400-01 Rice nucleus 62.05 47.08
TraesCS5A01G282200.1 Wheat peroxisome 61.54 46.51
TraesCS6B01G382700.1 Wheat peroxisome 61.03 46.3
TraesCS6D01G332100.1 Wheat peroxisome 61.03 46.3
TraesCS6A01G349600.1 Wheat peroxisome 60.51 45.91
GSMUA_Achr7P02730_001 Banana cytosol 61.54 45.63
HORVU6Hr1G083890.3 Barley plastid 61.54 39.6
Zm00001d021031_P002 Maize endoplasmic reticulum, vacuole 62.05 38.41
Bra006723.1-P Field mustard nucleus 22.56 16.67
Bra010927.1-P Field mustard nucleus 20.51 12.5
Bra030056.1-P Field mustard cytosol 20.0 12.46
Bra013402.1-P Field mustard nucleus 24.1 11.6
Bra031514.1-P Field mustard cytosol 16.92 10.44
Bra021950.1-P Field mustard nucleus 25.64 8.94
Bra020954.1-P Field mustard nucleus 24.1 8.92
Bra012508.1-P Field mustard nucleus 18.46 8.72
Bra025087.1-P Field mustard nucleus 25.13 8.64
Bra032800.1-P Field mustard cytosol 16.41 5.14
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.3MapMan:15.3.3.4.4EnsemblPlantsGene:Bra020685EnsemblPlants:Bra020685.1EnsemblPlants:Bra020685.1-P
InterPro:Cyclin-likeInterPro:Cyclin-like_sfInterPro:CyclinC/Ssn8InterPro:Cyclin_NGO:GO:0003674GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0006464GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016538GO:GO:0016592GO:GO:0019538GO:GO:0030234
GO:GO:0045859UniProt:M4DVZ1PFAM:PF00134PANTHER:PTHR10026PANTHER:PTHR10026:SF7SUPFAM:SSF47954
UniParc:UPI0002546329:::::
Description
AT5G48640 (E=7e-063) | cyclin family protein
Coordinates
chrA02:-:23760673..23762223
Molecular Weight (calculated)
22696.5 Da
IEP (calculated)
5.294
GRAVY (calculated)
-0.067
Length
195 amino acids
Sequence
(BLAST)
001: MEQEEVDVVH PLDKERGISV EDFKLIKFHM SNHMIKLAQH IKVRQRKSMV EFEPRLVALA CMYLASKAEE SIGMKVLEAL NYYLVVFHPY HSLSEFLQDA
101: AINDVNMNQI TWGIVNDTYT MDLILVHPPY RIALACIYIA SVHTEKDITA WFEDLHEDMN LVKNIAMEIL DFYENYRSIT EEKVNSAFSK LALKP
Best Arabidopsis Sequence Match ( AT5G48640.1 )
(BLAST)
001: MAANFWNSSH YKQLLDPEEV DVVHDLDKER GISIDDFKLI KFHMSNHIMK LAQHIKVRQR VVATAITYMR RVYIRKSMVE FEPRLVALTC LYLASKAEES
101: IVQARNLVFY IKRLYPDEYN KYELKDILGM EMKVLEALDY YLVVFHPYRS LSEFLQDAAL NDVNMNQITW GIVNDTYKMD LILVHPPYRI ALACIYIASV
201: HREKDITAWF EDLHEDMNLV KNIAMEILDF YENYRTITEE KVNSAFSKLA LKL
Arabidopsis Description
CYCC1-1Cyclin-C1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJK6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.