Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400051796 | Potato | cytosol | 100.0 | 100.0 |
| KRH46635 | Soybean | cytosol | 81.6 | 80.63 |
| KRG99632 | Soybean | cytosol | 80.8 | 79.84 |
| VIT_00s0360g00050.t01 | Wine grape | cytosol | 79.6 | 79.28 |
| AT5G48640.1 | Thale cress | cytosol | 74.8 | 73.91 |
| CDX86291 | Canola | cytosol | 73.2 | 72.62 |
| CDY51053 | Canola | cytosol | 73.2 | 72.33 |
| Bra020686.1-P | Field mustard | cytosol | 73.2 | 72.33 |
| CDY66082 | Canola | cytosol | 72.4 | 71.83 |
| CDY51052 | Canola | cytosol | 72.0 | 71.71 |
| CDY69301 | Canola | cytosol | 72.4 | 71.54 |
| CDX85352 | Canola | cytosol | 72.0 | 71.43 |
| AT5G48630.2 | Thale cress | cytosol, nucleus, plastid | 72.8 | 71.09 |
| Os09t0504400-01 | Rice | nucleus | 72.8 | 70.82 |
| TraesCS6D01G332100.1 | Wheat | peroxisome | 72.4 | 70.43 |
| Bra037473.1-P | Field mustard | mitochondrion | 58.8 | 70.33 |
| TraesCS6B01G382700.1 | Wheat | peroxisome | 72.0 | 70.04 |
| TraesCS6A01G349600.1 | Wheat | peroxisome | 72.0 | 70.04 |
| GSMUA_Achr7P02730_001 | Banana | cytosol | 73.6 | 69.96 |
| EER97007 | Sorghum | nucleus | 71.6 | 69.65 |
| TraesCS5D01G289300.2 | Wheat | peroxisome | 71.6 | 69.38 |
| TraesCS5B01G281600.1 | Wheat | peroxisome | 71.6 | 69.38 |
| Bra020685.1-P | Field mustard | cytosol | 53.6 | 68.72 |
| TraesCS5A01G282200.1 | Wheat | peroxisome | 70.8 | 68.6 |
| TraesCS5A01G057600.1 | Wheat | mitochondrion | 53.6 | 66.67 |
| HORVU6Hr1G083890.3 | Barley | plastid | 72.8 | 60.07 |
| Zm00001d021031_P002 | Maize | endoplasmic reticulum, vacuole | 72.0 | 57.14 |
| CDY05665 | Canola | endoplasmic reticulum, extracellular | 23.6 | 54.13 |
| Solyc09g075760.2.1 | Tomato | nucleus | 20.8 | 14.13 |
| Solyc07g032480.2.1 | Tomato | nucleus | 20.4 | 12.35 |
| Solyc01g098350.2.1 | Tomato | nucleus | 20.4 | 11.97 |
| Solyc10g078180.1.1 | Tomato | nucleus | 26.0 | 10.47 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.3 | MapMan:15.3.3.4.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:CyclinC/Ssn8 |
| InterPro:Cyclin_N | GO:GO:0000307 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006464 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016538 | GO:GO:0016592 | GO:GO:0019538 |
| GO:GO:0030234 | GO:GO:0045737 | GO:GO:0045944 | GO:GO:1901409 | UniProt:K4CAI1 | PFAM:PF00134 |
| PIRSF:PIRSF028758 | PANTHER:PTHR10026 | PANTHER:PTHR10026:SF7 | SMART:SM00385 | SUPFAM:SSF47954 | EnsemblPlantsGene:Solyc06g083260.2 |
| EnsemblPlants:Solyc06g083260.2.1 | UniParc:UPI0002765DD4 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6:-:48746952..48752387
Molecular Weight (calculated)
29258.6 Da
IEP (calculated)
6.798
GRAVY (calculated)
-0.164
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MAANFWISSQ YKELLDQEEV DVVHQLDKER GITLDDFKLI KLHMSNYVAR LAQNVKVRQR VVATAITYMR RVYVRRSMTE YDPRLVAPTC LYLASKAEES
101: TVQARLLVFY IKKLYSDEKY KYEIKDILDM EMKVLEALNY YLVVYHPYRS LAQFLQDAGM NDATQLTWGL INDTYKMDLI LIHPPHLITL ACIYIASVLK
201: DKETTAWFEE LRVDMNVVKN IAMEILDYYD GHRSISDERV NAAMSKLAGR
101: TVQARLLVFY IKKLYSDEKY KYEIKDILDM EMKVLEALNY YLVVYHPYRS LAQFLQDAGM NDATQLTWGL INDTYKMDLI LIHPPHLITL ACIYIASVLK
201: DKETTAWFEE LRVDMNVVKN IAMEILDYYD GHRSISDERV NAAMSKLAGR
001: MASNFWTSTH YKELKDPEEV NVVHPLDAQR GISVEDFRLI KLHMSNYISK LAQHIKIRQR VVATAVTYMR RVYTRKSLTE YEPRLVAPTC LYLACKAEES
101: VVHAKLLVFY MKKLYADEKF RYEIKDILEM EMKVLEALNF YLVVFHPYRS LPEFLQDSGI NDTSMTHLTW GLVNDTYRMD LILIHPPFLI TLACIYIASV
201: HKEKDIKTWF EELSVDMNIV KNIAMEILDF YENHRLFTEE RVHAAFNKLA TNP
101: VVHAKLLVFY MKKLYADEKF RYEIKDILEM EMKVLEALNF YLVVFHPYRS LPEFLQDSGI NDTSMTHLTW GLVNDTYRMD LILIHPPFLI TLACIYIASV
201: HKEKDIKTWF EELSVDMNIV KNIAMEILDF YENHRLFTEE RVHAAFNKLA TNP
Arabidopsis Description
Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4K359]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.