Factsheet for VIT_00s0360g00050.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99632	Soybean	cytosol	82.87	82.21
KRH46635	Soybean	cytosol	82.07	81.42
Solyc06g083260.2.1	Tomato	cytosol, nucleus	79.28	79.6
PGSC0003DMT400051796	Potato	cytosol	79.28	79.6
TraesCS6D01G332100.1	Wheat	peroxisome	74.5	72.76
TraesCS6B01G382700.1	Wheat	peroxisome	74.1	72.37
TraesCS6A01G349600.1	Wheat	peroxisome	74.1	72.37
Os09t0504400-01	Rice	nucleus	74.1	72.37
EER97007	Sorghum	nucleus	74.1	72.37
AT5G48640.1	Thale cress	cytosol	72.51	71.94
GSMUA_Achr7P02730_001	Banana	cytosol	75.3	71.86
CDX86291	Canola	cytosol	71.31	71.03
CDY66082	Canola	cytosol	71.31	71.03
CDY51052	Canola	cytosol	70.92	70.92
CDY51053	Canola	cytosol	70.52	69.96
Bra020686.1-P	Field mustard	cytosol	70.52	69.96
CDX85352	Canola	cytosol	70.12	69.84
CDY69301	Canola	cytosol	69.72	69.17
TraesCS5B01G281600.1	Wheat	peroxisome	70.52	68.6
TraesCS5D01G289300.2	Wheat	peroxisome	70.52	68.6
Bra037473.1-P	Field mustard	mitochondrion	56.97	68.42
AT5G48630.2	Thale cress	cytosol, nucleus, plastid	69.32	67.97
TraesCS5A01G282200.1	Wheat	peroxisome	69.72	67.83
TraesCS5A01G057600.1	Wheat	mitochondrion	53.78	67.16
Bra020685.1-P	Field mustard	cytosol	51.39	66.15
HORVU6Hr1G083890.3	Barley	plastid	73.71	61.06
Zm00001d021031_P002	Maize	endoplasmic reticulum, vacuole	74.5	59.37
CDY05665	Canola	endoplasmic reticulum, extracellular	23.11	53.21
VIT_17s0053g01060.t01	Wine grape	cytosol	6.37	15.24
VIT_05s0020g03070.t01	Wine grape	endoplasmic reticulum, extracellular	5.18	14.77
VIT_05s0020g03060.t01	Wine grape	nucleus	16.73	13.33
VIT_18s0001g12980.t01	Wine grape	nucleus	21.12	11.99
VIT_00s0125g00270.t01	Wine grape	nucleus	24.3	10.41
VIT_19s0027g01670.t01	Wine grape	nucleus	25.5	10.27
VIT_12s0028g00110.t01	Wine grape	nucleus	17.93	8.26

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100245896	wikigene:100245896	MapMan:13.1.1.1.3	MapMan:15.3.3.4.4	ProteinID:CBI41021
ProteinID:CBI41021.3	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:CyclinC/Ssn8	InterPro:Cyclin_N	UniProt:D7UE56
EMBL:FN596787	GO:GO:0000307	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016538
GO:GO:0016592	GO:GO:0019538	GO:GO:0030234	GO:GO:0045737	GO:GO:0045859	GO:GO:0045944
GO:GO:1901409	EntrezGene:LOC100245896	wikigene:LOC100245896	PFAM:PF00134	PIRSF:PIRSF028758	PANTHER:PTHR10026
PANTHER:PTHR10026:SF7	SMART:SM00385	SUPFAM:SSF47954	TIGR:TC56372	UniParc:UPI0001BE55D5	ArrayExpress:VIT_00s0360g00050
EnsemblPlantsGene:VIT_00s0360g00050	EnsemblPlants:VIT_00s0360g00050.t01	unigene:Vvi.1164	RefSeq:XP_002271774	RefSeq:XP_002271774.2	RefSeq:XP_003635266
RefSeq:XP_003635266.1	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:25539853..25557985

Molecular Weight (calculated)

29468.8 Da

IEP (calculated)

7.230

GRAVY (calculated)

-0.196

Length

251 amino acids

Sequence
(BLAST)

001: MAANFWTSSH YKQLLDQEEV DVVHPLDKEK GVTLEDFKLI KMHMANYIGR LGQNVKVRQR VVATAITYMR RVYTRKAMTE YDPRLVAPTS LYLAAKAEES
101: TVQARLLVFY VRKLNPDEKY RYEIKDILEM EMKILEALNY YLVVFHPYRA LSQLLQDANL NDLTQLSWGI VNDTYKMDLI LIYPPHLIAL ACIYIASVHK
201: DKETTAWFEE LRVDMNVVKN ISMEILDFYD SHRTITEDRI TTTFNKLALR S

Best Arabidopsis Sequence Match ( AT5G48630.1 )
(BLAST)

001: MASNFWTSTH YKELKDPEEV NVVHPLDAQR GISVEDFRLI KLHMSNYISK LAQHIKIRQR VVATAVTYMR RVYTRKSLTE YEPRLVAPTC LYLACKAEES
101: VVHAKLLVFY MKKLYADEKF RYEIKDILEM EMKVLEALNF YLVVFHPYRS LPEFLQDSGI NDTSMTHLTW GLVNDTYRMD LILIHPPFLI TLACIYIASV
201: HKEKDIKTWF EELSVDMNIV KNIAMEILDF YENHRLFTEE RVHAAFNKLA TNP

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4K359]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.