Factsheet for VIT_05s0020g03070.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

nucleus 2
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35545	Soybean	nucleus	67.05	15.86
KRG91263	Soybean	nucleus	67.05	15.73
Solyc09g075760.2.1	Tomato	nucleus	60.23	14.4
PGSC0003DMT400081343	Potato	nucleus	60.23	13.25
TraesCS3D01G199600.2	Wheat	nucleus	51.14	12.64
TraesCS3B01G227700.2	Wheat	nucleus	51.14	12.64
KRH27619	Soybean	cytosol	53.41	12.63
TraesCS3A01G196600.1	Wheat	nucleus	50.0	12.36
HORVU3Hr1G059980.2	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	48.86	11.2
VIT_00s0125g00270.t01	Wine grape	nucleus	39.77	5.97
VIT_19s0027g01670.t01	Wine grape	nucleus	40.91	5.78
VIT_18s0001g12980.t01	Wine grape	nucleus	27.27	5.43
VIT_00s0360g00050.t01	Wine grape	cytosol	14.77	5.18
VIT_05s0020g03060.t01	Wine grape	nucleus	13.64	3.81
VIT_12s0028g00110.t01	Wine grape	nucleus	19.32	3.12
Zm00001d040936_P002	Maize	plastid	9.09	2.44
OQU86869	Sorghum	cytosol, nucleus, plastid	7.95	2.2
VIT_17s0053g01060.t01	Wine grape	cytosol	2.27	1.9

Protein Annotations

Gene3D:1.10.472.10	MapMan:35.2	ProteinID:CBI26221	ProteinID:CBI26221.3	InterPro:Cyclin-like_sf	UniProt:D7T6V0
EMBL:FN595749	GO:GO:0000307	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016538	GO:GO:0019538	GO:GO:0030234	GO:GO:0045737
GO:GO:0045944	GO:GO:1901409	PANTHER:PTHR10026	PANTHER:PTHR10026:SF67	SUPFAM:SSF47954	UniParc:UPI0001BE2CB5
ArrayExpress:VIT_05s0020g03070	EnsemblPlantsGene:VIT_05s0020g03070	EnsemblPlants:VIT_05s0020g03070.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:4800109..4802663

Molecular Weight (calculated)

10034.3 Da

IEP (calculated)

6.215

GRAVY (calculated)

0.581

Length

88 amino acids

Sequence
(BLAST)

1: MFASILVLLS AISADESWKI FHLGCCIFSW LRSSLWLQFK PHHIAAGAAY LAAKILNLDV ASYQYIWQEF QTTPAILQDV AQQLMELF

Best Arabidopsis Sequence Match ( AT5G45190.3 )
(BLAST)

001: MFLAGKVEET PRPLKDVIFV SYEIINKKDP GASQKIKQKE VYEQQKELIL NGEKIVLSTL GFDLNVYHPY KPLVEAIKKF KVAQNALAQV AWNFVNDGLR
101: TSLCLQFKPH HIAAGAIFLA AKFLKVKLPS DGEKVWWQEF DVTPRQLEDV SNQMLELYEQ NRVPASQGSE VESSVGGGSA QRPGSRNAVS TDEHVGSRQT
201: SSVRSTHEQS NSDNHGGSSK GVLNQNNENG GGEAANVSVD NKEEIERETK ESSLHLESHP AHKDNVREAP HNSRPLVEGP GKDNSEREGG ELQDDGAVHK
301: SRNVDVGDAL ISQSPKDLKL LRDKVKAKRE KAKKLLGERT RKKDLMDEDD LIERELEDVQ LAVEDEKTKE RKVQSRPKAE NSDLMGTEHG EILDVKGEVK
401: NTEEGEMVNN NVSPMMHSRK RKMGSPPEKQ SEGKRRHNSE NGEESHKTSR GSSHHGDREH RRHSQENNHS

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.