CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040936_P002	Maize	plastid	83.96	81.4
TraesCS3D01G199600.2	Wheat	nucleus	61.64	55.06
TraesCS3B01G227700.2	Wheat	nucleus	60.69	54.21
TraesCS3A01G196600.1	Wheat	nucleus	60.38	53.93
HORVU3Hr1G059980.2	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	60.06	49.74
GSMUA_Achr8P00390_001	Banana	mitochondrion	42.77	40.0
KRH35545	Soybean	nucleus	38.99	33.33
KRG91263	Soybean	nucleus	38.68	32.8
KRH27619	Soybean	cytosol	37.11	31.72
Solyc09g075760.2.1	Tomato	nucleus	36.16	31.25
PGSC0003DMT400081343	Potato	nucleus	36.48	29.0
EER97007	Sorghum	nucleus	13.52	16.73
EES11326	Sorghum	nucleus	24.84	16.12
EER88086	Sorghum	nucleus	23.27	15.55
KXG29406	Sorghum	cytosol	21.7	12.48
KXG23456	Sorghum	nucleus	22.96	12.41
OQU93178	Sorghum	nucleus	22.64	12.33
KXG30252	Sorghum	nucleus	11.95	11.76
EES07541	Sorghum	plastid	21.7	9.9
VIT_05s0020g03070.t01	Wine grape	endoplasmic reticulum, extracellular	2.2	7.95

Protein Annotations

EnsemblPlants:OQU86869	EnsemblPlantsGene:SORBI_3003G166750	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
PANTHER:PTHR10026	PANTHER:PTHR10026:SF67	PFAM:PF00134	PIRSF:PIRSF028758	ProteinID:OQU86869	ProteinID:OQU86869.1
SEG:seg	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0009DC8DBE	UniProt:A0A1W0VXK9	MapMan:35.1

Description

hypothetical protein

Coordinates

chr3:+:25892838..25899851

Molecular Weight (calculated)

35544.5 Da

IEP (calculated)

8.159

GRAVY (calculated)

-0.319

Length

318 amino acids

Sequence
(BLAST)

001: MSSQSSGGGP ANHHPRPNYY PYTFQYDPPL LHSNSRRRRR DDDDPYQPHL PLPHALSYGA TAVVAGTVPC HVTRNPLVLS RLQECLFPPL PQPHPAAGPP
101: PTKRARRAAD TRWNPPPPPP PTLQPALVPV APEPRDVGAS AGALLSRDEI ERRSPSRRDG IDSALETRLR ASYCAYMRCL GIWLGLPQTT IARAVVFCHR
201: FFLHRYLACQ DRYLVATAAL FLAAKSEETA CLLNTVLRAS CEISQNQEFN LFRYMLCGQD WFEQYRESVI QTEQMILTTL DFELEVTHPY AALSSALGKL
301: GLSHTVLLNV AWNLINEG

Best Arabidopsis Sequence Match ( AT5G45190.1 )
(BLAST)

001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.