CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11326	Sorghum	nucleus	78.78	76.53
HORVU2Hr1G083340.2	Barley	nucleus	76.26	74.69
TraesCS2A01G323500.1	Wheat	nucleus	76.26	74.54
TraesCS2B01G358600.1	Wheat	nucleus	76.05	74.33
TraesCS4A01G199300.1	Wheat	nucleus	73.53	74.0
TraesCS2D01G339400.1	Wheat	nucleus	76.68	73.89
TraesCS4D01G113600.1	Wheat	nucleus	73.53	72.92
TraesCS4B01G116000.1	Wheat	nucleus	73.32	72.86
HORVU4Hr1G021250.6	Barley	nucleus	73.32	72.86
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	54.2	67.72
TraesCS4A01G199600.1	Wheat	nucleus	55.46	63.46
TraesCS4D01G113400.1	Wheat	nucleus	59.03	63.29
TraesCS4B01G115800.1	Wheat	nucleus	55.25	63.22
GSMUA_Achr6P30140_001	Banana	nucleus	64.92	60.95
GSMUA_Achr6P31620_001	Banana	cytosol	59.45	55.17
AT1G35440.1	Thale cress	cytosol	26.47	51.01
KRH50485	Soybean	nucleus	59.24	49.74
KRG89442	Soybean	nucleus	58.82	49.3
CDX71123	Canola	nucleus	27.31	49.24
CDY26395	Canola	nucleus	53.78	48.67
VIT_19s0027g01670.t01	Wine grape	nucleus	63.45	48.48
VIT_00s0125g00270.t01	Wine grape	nucleus	59.66	48.46
KRG89447	Soybean	nucleus	57.56	48.32
OQU93178	Sorghum	nucleus	58.4	47.6
CDX88692	Canola	nucleus	26.26	47.35
CDY09329	Canola	nucleus	52.73	47.27
Bra020954.1-P	Field mustard	nucleus	52.31	47.25
KRH13708	Soybean	nucleus	60.08	47.19
CDX76472	Canola	nucleus	52.31	47.07
HORVU4Hr1G021220.13	Barley	cytosol	43.49	47.05
Bra006723.1-P	Field mustard	nucleus	26.05	46.97
KRH43745	Soybean	nucleus	60.08	46.81
AT4G19600.1	Thale cress	nucleus	53.15	46.77
Bra025087.1-P	Field mustard	nucleus	55.67	46.74
CDX99359	Canola	nucleus	52.31	46.63
Bra021950.1-P	Field mustard	nucleus	53.99	45.98
Solyc10g078180.1.1	Tomato	nucleus	59.87	45.89
CDX82583	Canola	nucleus	54.62	45.86
CDY39416	Canola	nucleus	55.67	45.77
CDY65933	Canola	nucleus	53.78	45.07
AT5G45190.2	Thale cress	nucleus	55.46	44.75
CDX99363	Canola	nucleus	37.4	44.17
CDX78940	Canola	nucleus	37.18	43.7
Bra013402.1-P	Field mustard	nucleus	37.18	43.7
KXG23456	Sorghum	nucleus	53.15	43.03
AT4G19560.1	Thale cress	nucleus	41.39	42.83
CDY24526	Canola	cytosol, nucleus, peroxisome	27.94	42.09
Bra031514.1-P	Field mustard	cytosol	27.31	41.14
CDY54138	Canola	cytosol	27.31	41.14
EER97007	Sorghum	nucleus	14.08	26.07
KXG29406	Sorghum	cytosol	28.78	24.77
OQU86869	Sorghum	cytosol, nucleus, plastid	15.55	23.27
EES07541	Sorghum	plastid	34.03	23.24
KXG30252	Sorghum	nucleus	13.66	20.12

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2	EntrezGene:8070784	UniProt:C5Z6W0	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_N	EnsemblPlants:EER88086	ProteinID:EER88086	ProteinID:EER88086.1	GO:GO:0000307
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016538	GO:GO:0019538	GO:GO:0019901	GO:GO:0030234
GO:GO:0045737	GO:GO:0045944	GO:GO:1901409	ProteinID:KXG19606.1	ProteinID:KXG19607.1	PFAM:PF00134
PIRSF:PIRSF036580	PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	SMART:SM00385	EnsemblPlantsGene:SORBI_3010G086600	SUPFAM:SSF47954
UniParc:UPI0001A89366	RefSeq:XP_002436719.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:7443348..7448447

Molecular Weight (calculated)

54466.8 Da

IEP (calculated)

9.581

GRAVY (calculated)

-0.764

Length

476 amino acids

Sequence
(BLAST)

001: MDVMQTSDSS HHGIVENSPY RIPYGRHAEG GKLGNSWYFS RKEIEENSIS RKDGIDLKKE SYFRKAYCTF LQDFGMRLQV PQVTIATAIV FCHRFFLRQS
101: HAKNDRQTIA TVCMFLAGKV EETIRSLRDV VLLSYEIINK KDPAALQRIR QKEVYEQQKE LILLGERVVL VTLGFDLNIQ HPYKPLVEAI GRFKVAQSAL
201: AQVAWNFVND GLRTSLCLQF KPHQIAAGAI FMAAKFLKIK LPSGGEKVWW QEFDVTPRHL EEISNQILEL YEQNVVAPPP LQGNDTDRSP ASVPNQRAPG
301: KVPTAHEPQA SRQLSHQNVP GHHGYDHAHP EKQHPNQRTP RNEARDSVVN TNDGPKISSS MMDAMRKIDK DKVKAALEKR RKSKGDVPRK VDIMDDDDLI
401: ERELEHGVEL AAEGEKIKQE RRQSWPHPAH RDDSLKAARM IKNTEGELST DKQGHRSPDR NWNHDRGERD IKRLRS

Best Arabidopsis Sequence Match ( AT4G19600.1 )
(BLAST)

001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R

Arabidopsis Description

CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.