Factsheet for HORVU2Hr1G083340.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G358600.1	Wheat	nucleus	96.91	96.71
TraesCS2A01G323500.1	Wheat	nucleus	96.91	96.71
TraesCS2D01G339400.1	Wheat	nucleus	96.91	95.34
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	30.25	91.3
HORVU4Hr1G021250.6	Barley	nucleus	83.95	85.18
EES11326	Sorghum	nucleus	85.19	84.49
Zm00001d026030_P014	Maize	nucleus	84.36	83.67
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	65.02	82.94
EER88086	Sorghum	nucleus	74.69	76.26
Zm00001d027376_P002	Maize	nucleus, plastid	83.33	72.58
GSMUA_Achr6P30140_001	Banana	nucleus	69.96	67.06
GSMUA_Achr6P31620_001	Banana	cytosol	63.37	60.04
HORVU5Hr1G038970.16	Barley	nucleus	65.23	58.17
HORVU4Hr1G021220.13	Barley	cytosol	48.56	53.64
VIT_19s0027g01670.t01	Wine grape	nucleus	68.31	53.29
KRH50485	Soybean	nucleus	61.73	52.91
VIT_00s0125g00270.t01	Wine grape	nucleus	63.79	52.9
KRG89442	Soybean	nucleus	61.73	52.82
AT1G35440.1	Thale cress	cytosol	26.54	52.23
CDY26395	Canola	nucleus	56.38	52.09
KRG89447	Soybean	nucleus	60.7	52.03
KRH13708	Soybean	nucleus	64.61	51.82
Bra020954.1-P	Field mustard	nucleus	55.76	51.42
CDY09329	Canola	nucleus	55.76	51.04
AT4G19600.1	Thale cress	nucleus	56.79	51.02
KRH43745	Soybean	nucleus	63.99	50.9
CDX76472	Canola	nucleus	55.35	50.85
CDX71123	Canola	nucleus	27.57	50.76
CDX99359	Canola	nucleus	55.35	50.37
Bra025087.1-P	Field mustard	nucleus	58.44	50.09
Solyc10g078180.1.1	Tomato	nucleus	63.17	49.44
CDX88692	Canola	nucleus	26.75	49.24
Bra021950.1-P	Field mustard	nucleus	56.58	49.2
CDY39416	Canola	nucleus	58.44	49.05
Bra006723.1-P	Field mustard	nucleus	26.54	48.86
CDX82583	Canola	nucleus	57.0	48.85
CDY65933	Canola	nucleus	56.58	48.42
AT5G45190.2	Thale cress	nucleus	58.64	48.31
CDX99363	Canola	nucleus	38.68	46.65
Bra013402.1-P	Field mustard	nucleus	38.27	45.93
CDX78940	Canola	nucleus	38.27	45.93
CDY24526	Canola	cytosol, nucleus, peroxisome	29.63	45.57
AT4G19560.1	Thale cress	nucleus	43.0	45.43
Bra031514.1-P	Field mustard	cytosol	29.22	44.94
CDY54138	Canola	cytosol	29.22	44.94
HORVU6Hr1G056640.2	Barley	plastid	5.35	30.59
HORVU3Hr1G059980.2	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	20.99	26.56
HORVU6Hr1G083890.3	Barley	plastid	13.58	21.78
HORVU6Hr1G080430.3	Barley	nucleus	19.75	21.52
HORVU6Hr1G017740.2	Barley	nucleus	27.37	14.63

Protein Annotations

EMBL:AK370740	EnsemblPlants:HORVU2Hr1G083340.2	EnsemblPlantsGene:HORVU2Hr1G083340	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	PFAM:PF00134	PIRSF:PIRSF036580	SEG:seg
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0002008166	UniProt:F2E3L7	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2E3L7]

Coordinates

chrchr2H:-:605091229..605098726

Molecular Weight (calculated)

55575.6 Da

IEP (calculated)

8.084

GRAVY (calculated)

-0.883

Length

486 amino acids

Sequence
(BLAST)

001: MDIMQTSDSS HHGIVENSPY TTPYDRRVEG DQLGASWYFS RKEIEENSLS RRDGIDLKKE SYLRKSYCTF LQDFGMRLKV PQVTIATAIV FCHRFFLRQS
101: HAKNDRQTIA TVCMFLAGKV EETPRPLKDV VLISYEIIHK KDPAAVARIK QKEVYEQQKE LLLIGERLVL VTLGFDMNVH HPYKPLVEAI KKFKVAQNAL
201: AQVAWNFVND GLRTSLCLQF KPHHIAAGAI FLAAKFLKVK LPADGEKVWW QEFDVTPRQL EEVSNQMLEL YEQNRVGPPP SQGNDTEGSS ASVVNQRAPV
301: KAEEPPAHEA HQAPRQSNIP GRHGHDHPQP EKQNSNQRIP KSEARDGTAN SNEGTNMSSS MMDAMKKIDK DKVKAALEKR RKSKGDAGRK VDVMDDDDLI
401: ERELEHGVEL AAEDEKKHDR RQSWPHPVHR EDHQNTARKV ENTEEGELSL DSQEHRSPGP DIRKRKEVYD RSNDRSAERD IKRPRP

Best Arabidopsis Sequence Match ( AT4G19600.1 )
(BLAST)

001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R

Arabidopsis Description

CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.