Factsheet for HORVU3Hr1G059980.2

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, plasma membrane, golgi

Predictor Summary:

mitochondrion 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, secretory
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	plastid
TargetP:	secretory

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G199600.2	Wheat	nucleus	85.94	92.7
TraesCS3B01G227700.2	Wheat	nucleus	84.64	91.29
TraesCS3A01G196600.1	Wheat	nucleus	84.38	91.01
Zm00001d040936_P002	Maize	plastid	54.17	63.41
OQU86869	Sorghum	cytosol, nucleus, plastid	49.74	60.06
VIT_05s0020g03070.t01	Wine grape	endoplasmic reticulum, extracellular	11.2	48.86
KRH35545	Soybean	nucleus	40.62	41.94
KRG91263	Soybean	nucleus	40.36	41.33
Solyc09g075760.2.1	Tomato	nucleus	39.32	41.03
KRH27619	Soybean	cytosol	39.32	40.59
GSMUA_Achr8P00390_001	Banana	mitochondrion	34.38	38.82
PGSC0003DMT400081343	Potato	nucleus	39.84	38.25
HORVU6Hr1G056640.2	Barley	plastid	5.21	23.53
HORVU4Hr1G021220.13	Barley	cytosol	25.52	22.27
HORVU4Hr1G021250.6	Barley	nucleus	26.82	21.5
HORVU2Hr1G083340.2	Barley	nucleus	26.56	20.99
HORVU5Hr1G038970.16	Barley	nucleus	26.3	18.53
HORVU6Hr1G083890.3	Barley	plastid	14.58	18.48
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	16.15	16.27
HORVU6Hr1G080430.3	Barley	nucleus	18.23	15.7
HORVU6Hr1G017740.2	Barley	nucleus	17.97	7.59

Protein Annotations

EnsemblPlants:HORVU3Hr1G059980.2	EnsemblPlantsGene:HORVU3Hr1G059980	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
PANTHER:PTHR10026	PANTHER:PTHR10026:SF67	PFAM:PF00134	PIRSF:PIRSF028758	SEG:seg	SMART:SM00385
SUPFAM:SSF47954	UniParc:UPI000B47ECEB	UniProt:A0A287L8V5	MapMan:13.1.1.1.9	:	:

Description

No Description!

Coordinates

chrchr3H:-:456193983..456205856

Molecular Weight (calculated)

43037.1 Da

IEP (calculated)

8.244

GRAVY (calculated)

-0.405

Length

384 amino acids

Sequence
(BLAST)

001: XXXXLIQIST RTAVAATATA TAAAMSFSQP FHPDSVRHRH HPYHHDSPPP HRPRPRGRDH DDAYHIHPQS YPQPCSYTNA ATAPYHVRRD PLPNPHLQEP
101: IFPQPPQRAP APGPPPPKRA RRAPEPRCDP PAAAVPRLLP TRQPEDGDTR ALLSREEIER RSPSWKDGID SALEARLRAS YCAYLRCLGF RLGLPQTTIA
201: TAVVYCHQYF FHRSHACNDR FLVATAALFL ASKTEETTCL LNTILRASCE VSENQEFNLL PYISRGQNWF ELYRESVIQA EQMILTTLDF ELEVAHPYTS
301: LSSALSRLGL SHSVLFNVAL SLINEGLQSS LWLQFKPYHI AAGAAFLAGK FLRYDITFHQ NFWHEFKTTP HIVQDVVQQL KELL

Best Arabidopsis Sequence Match ( AT4G19600.1 )
(BLAST)

001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R

Arabidopsis Description

CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.