Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU86869 | Sorghum | cytosol, nucleus, plastid | 81.4 | 83.96 |
| TraesCS3D01G199600.2 | Wheat | nucleus | 64.02 | 58.99 |
| TraesCS3B01G227700.2 | Wheat | nucleus | 63.41 | 58.43 |
| TraesCS3A01G196600.1 | Wheat | nucleus | 62.8 | 57.87 |
| HORVU3Hr1G059980.2 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 63.41 | 54.17 |
| GSMUA_Achr8P00390_001 | Banana | mitochondrion | 42.38 | 40.88 |
| KRH35545 | Soybean | nucleus | 39.63 | 34.95 |
| KRG91263 | Soybean | nucleus | 39.33 | 34.4 |
| Solyc09g075760.2.1 | Tomato | nucleus | 38.41 | 34.24 |
| KRH27619 | Soybean | cytosol | 37.8 | 33.33 |
| Zm00001d033021_P001 | Maize | cytosol | 17.99 | 32.24 |
| PGSC0003DMT400081343 | Potato | nucleus | 38.41 | 31.5 |
| Zm00001d027790_P001 | Maize | cytosol | 22.87 | 27.78 |
| Zm00001d019681_P002 | Maize | nucleus | 17.38 | 26.76 |
| Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 11.28 | 22.98 |
| Zm00001d020158_P001 | Maize | nucleus | 24.09 | 19.22 |
| Zm00001d026030_P014 | Maize | nucleus | 25.61 | 17.14 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 25.61 | 15.05 |
| Zm00001d021031_P002 | Maize | endoplasmic reticulum, vacuole | 14.02 | 14.6 |
| Zm00001d015164_P001 | Maize | cytosol | 21.65 | 13.05 |
| Zm00001d017392_P009 | Maize | cytosol | 21.34 | 10.67 |
| Zm00001d051291_P003 | Maize | cytosol | 21.65 | 10.55 |
| VIT_05s0020g03070.t01 | Wine grape | endoplasmic reticulum, extracellular | 2.44 | 9.09 |
| Zm00001d033023_P001 | Maize | cytosol | 1.83 | 2.44 |
| Zm00001d019684_P002 | Maize | mitochondrion | 1.83 | 2.15 |
Protein Annotations
| EnsemblPlants:Zm00001d040936_P002 | EnsemblPlants:Zm00001d040936_T002 | EnsemblPlantsGene:Zm00001d040936 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_N | PANTHER:PTHR10026 | PANTHER:PTHR10026:SF67 | PFAM:PF00134 | PIRSF:PIRSF028758 | ProteinID:ONM32207.1 |
| SEG:seg | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI0002212CE5 | UniProt:A0A1D6MTJ2 | MapMan:13.1.1.1.9 |
Description
Cyclin-T1-2
Coordinates
chr3:+:80811933..80814817
Molecular Weight (calculated)
36718.7 Da
IEP (calculated)
7.711
GRAVY (calculated)
-0.258
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSQSSAGGP AIHHPHSNYH PYIFQHDPPL HSNSRRRRRN HDDPYQPYLP LPHAHSHGAT AVVTGTVRCH VPRDPLVLSH LQERLFPTLP QHHPIAGPPP
101: TKRARRAPDT PWDPPPPTLQ PALVPVALER PPDVGHSAGA LLSRDEIERR SPSRRDGIDS ALEARLRASY CAYLHCLGNR LGLPQTTIAT AVVFCHRFFF
201: HRSHACHDRF LVATAALFLA AKAEETACLL NTVLRASCEV SQNQEFNLLP YMLCGQDWFE QYRESVIQAE QMILTTLDFE LEVAHPYASL SSALGKLGLT
301: HTVLFNVAWN LINEGYAFIF LNALTITY
101: TKRARRAPDT PWDPPPPTLQ PALVPVALER PPDVGHSAGA LLSRDEIERR SPSRRDGIDS ALEARLRASY CAYLHCLGNR LGLPQTTIAT AVVFCHRFFF
201: HRSHACHDRF LVATAALFLA AKAEETACLL NTVLRASCEV SQNQEFNLLP YMLCGQDWFE QYRESVIQAE QMILTTLDFE LEVAHPYASL SSALGKLGLT
301: HTVLFNVAWN LINEGYAFIF LNALTITY
001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS
Arabidopsis Description
Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.