Factsheet for Zm00001d020158_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027790_P001	Maize	cytosol	53.77	81.85
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	31.14	79.5
Zm00001d026030_P014	Maize	nucleus	64.96	54.49
TraesCS5A01G103900.2	Wheat	nucleus	67.4	52.66
Os12t0485400-01	Rice	nucleus	67.64	51.2
HORVU5Hr1G038970.16	Barley	nucleus	67.4	50.83
TraesCS5D01G121900.1	Wheat	nucleus	68.37	50.18
GSMUA_Achr6P30140_001	Banana	nucleus	60.1	48.72
GSMUA_Achr6P31620_001	Banana	cytosol	60.58	48.54
TraesCS5B01G112100.2	Wheat	nucleus	67.88	47.94
AT1G35440.1	Thale cress	cytosol	28.47	47.37
Zm00001d027376_P002	Maize	nucleus, plastid	64.23	47.31
CDX71123	Canola	nucleus	29.68	46.21
CDX88692	Canola	nucleus	28.71	44.7
Bra006723.1-P	Field mustard	nucleus	28.47	44.32
KRH50485	Soybean	nucleus	60.83	44.09
KRG89442	Soybean	nucleus	60.58	43.84
KRG89447	Soybean	nucleus	59.85	43.39
Bra020954.1-P	Field mustard	nucleus	54.99	42.88
AT4G19600.1	Thale cress	nucleus	56.45	42.88
CDY26395	Canola	nucleus	54.74	42.78
CDX76472	Canola	nucleus	54.99	42.72
CDY09329	Canola	nucleus	54.99	42.56
CDX99359	Canola	nucleus	54.74	42.13
VIT_19s0027g01670.t01	Wine grape	nucleus	61.56	40.61
Bra031514.1-P	Field mustard	cytosol	31.14	40.51
CDY24526	Canola	cytosol, nucleus, peroxisome	31.14	40.51
KRH13708	Soybean	nucleus	59.61	40.43
Bra021950.1-P	Field mustard	nucleus	54.74	40.25
VIT_00s0125g00270.t01	Wine grape	nucleus	56.93	39.93
CDY54138	Canola	cytosol	30.66	39.87
Solyc10g078180.1.1	Tomato	nucleus	60.1	39.77
KRH43745	Soybean	nucleus	59.12	39.77
Bra025087.1-P	Field mustard	nucleus	54.74	39.68
CDY65933	Canola	nucleus	54.74	39.61
CDX82583	Canola	nucleus	54.01	39.15
CDY39416	Canola	nucleus	54.74	38.86
AT5G45190.2	Thale cress	nucleus	55.47	38.64
CDX99363	Canola	nucleus	37.71	38.46
CDX78940	Canola	nucleus	37.71	38.27
Bra013402.1-P	Field mustard	nucleus	37.71	38.27
AT4G19560.1	Thale cress	nucleus	42.58	38.04
Zm00001d033021_P001	Maize	cytosol	13.14	29.51
Zm00001d019681_P002	Maize	nucleus	12.65	24.41
Zm00001d040936_P002	Maize	plastid	19.22	24.09
Zm00001d015164_P001	Maize	cytosol	29.68	22.43
Zm00001d017392_P009	Maize	cytosol	35.28	22.1
Zm00001d051291_P003	Maize	cytosol	35.04	21.4
Zm00001d021031_P002	Maize	endoplasmic reticulum, vacuole	14.36	18.73
Zm00001d033023_P001	Maize	cytosol	8.76	14.63
Zm00001d019684_P002	Maize	mitochondrion	8.27	12.19

Protein Annotations

EnsemblPlants:Zm00001d020158_P001	EnsemblPlants:Zm00001d020158_T001	EnsemblPlantsGene:Zm00001d020158	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	PFAM:PF00134	PIRSF:PIRSF036580	ProteinID:ONM54387.1
SEG:seg	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI00084421F3	UniProt:A0A1D6I2J2	MapMan:13.1.1.1.9
MapMan:15.3.2.1.2	:	:	:	:	:

Description

Cyclin-T1-5

Coordinates

chr7:-:96369649..96377935

Molecular Weight (calculated)

46776.8 Da

IEP (calculated)

8.572

GRAVY (calculated)

-0.712

Length

411 amino acids

Sequence
(BLAST)

001: MAMVPSDSSH HGAVDNSPNG FTQGRREEAR KLGPSWYFSR KEIEEHSPSR RDDIDLKKEC SLRKSYCSFL QDLGMKLKVP QVTIATATVF CHRFFLRQSH
101: AKNDRRIIAT VCMFLAGKVE ETPRPLKDVI LVSYELIHKK DSTAGQRIKQ QKEIYDKQKE LILLGERIVL VTLGFDLNID HAYKPLVEAI RRFNVGSKSS
201: LPQVAWNFVN DGLRTSLCLQ FEPHHIAAGA IFLAAKFLKV KLPSDGDKVW WQDFDVTPRQ LEEKNKSGGK SDAGMDRFCH EKSPPGHHYS KVSHESHNPV
301: EEQKPHQSHD NPNERIDGIL GGNEVPGVST SRIDAMNKID KGKVKAALEK RRKTKGDITT KVDVMDDDDL LERELEHGVE LAIEDEKIKQ DKMQNLSHIK
401: DKKITQDNMQ N

Best Arabidopsis Sequence Match ( AT4G19560.1 )
(BLAST)

001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL

Arabidopsis Description

CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.