CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020954.1-P	Field mustard	nucleus	96.6	96.96
CDY09329	Canola	nucleus	97.16	96.8
Zm00001d038497_P001	Maize	cytosol, extracellular, peroxisome	26.28	86.34
CDX99359	Canola	nucleus	85.07	84.27
AT4G19600.1	Thale cress	nucleus	85.07	83.18
CDY26395	Canola	nucleus	73.91	74.33
CDX82583	Canola	nucleus	76.75	71.6
CDY39416	Canola	nucleus	77.88	71.16
CDY65933	Canola	nucleus	76.37	71.13
Zm00001d027790_P001	Maize	cytosol	34.22	67.04
TraesCS4A01G199300.1	Wheat	nucleus	51.42	57.51
TraesCS4D01G113600.1	Wheat	nucleus	51.61	56.88
TraesCS4B01G116000.1	Wheat	nucleus	51.42	56.78
EES11326	Sorghum	nucleus	52.55	56.73
HORVU4Hr1G021250.6	Barley	nucleus	51.23	56.58
Zm00001d026030_P014	Maize	nucleus	52.36	56.53
KRH50485	Soybean	nucleus	59.55	55.56
TraesCS2A01G323500.1	Wheat	nucleus	51.04	55.44
HORVU2Hr1G083340.2	Barley	nucleus	50.85	55.35
TraesCS2B01G358600.1	Wheat	nucleus	50.66	55.03
Zm00001d020158_P001	Maize	nucleus	42.72	54.99
HORVU0Hr1G007890.2	Barley	cytosol, nucleus	39.51	54.86
KRG89442	Soybean	nucleus	58.79	54.75
TraesCS2D01G339400.1	Wheat	nucleus	51.04	54.66
KRG89447	Soybean	nucleus	57.84	53.97
TraesCS4A01G199600.1	Wheat	nucleus	41.78	53.12
TraesCS4B01G115800.1	Wheat	nucleus	41.59	52.88
VIT_00s0125g00270.t01	Wine grape	nucleus	58.03	52.39
EER88086	Sorghum	nucleus	47.07	52.31
TraesCS5A01G103900.2	Wheat	nucleus	50.85	51.14
TraesCS4D01G113400.1	Wheat	nucleus	42.91	51.13
Os12t0485400-01	Rice	nucleus	52.36	51.01
CDX99363	Canola	nucleus	38.56	50.62
CDX71123	Canola	nucleus	25.14	50.38
Zm00001d027376_P002	Maize	nucleus, plastid	52.93	50.18
HORVU5Hr1G038970.16	Barley	nucleus	51.61	50.09
GSMUA_Achr6P04070_001	Banana	nucleus	45.94	50.0
CDX88692	Canola	nucleus	24.95	50.0
CDX78940	Canola	nucleus	38.19	49.88
TraesCS5D01G121900.1	Wheat	nucleus	52.36	49.46
CDY54138	Canola	cytosol	29.11	48.73
CDY24526	Canola	cytosol, nucleus, peroxisome	28.73	48.1
TraesCS5B01G112100.2	Wheat	nucleus	52.74	47.94
HORVU4Hr1G021220.13	Barley	cytosol	36.67	44.09
OQU93178	Sorghum	nucleus	46.31	41.95
CDY60279	Canola	cytosol	24.76	41.85
CDY03933	Canola	cytosol	24.76	41.85
KXG23456	Sorghum	nucleus	44.8	40.31
CDY11776	Canola	cytosol	23.44	38.75
CDX90099	Canola	nucleus	23.44	38.51
CDY03883	Canola	nucleus	18.9	23.98
CDX86291	Canola	cytosol	11.34	23.81
CDY51595	Canola	nucleus	18.53	23.73
CDX85352	Canola	cytosol	11.15	23.41
CDY66082	Canola	cytosol	11.15	23.41
CDY51052	Canola	cytosol	10.96	23.11
CDY51053	Canola	cytosol	10.96	22.92
CDY69301	Canola	cytosol	10.96	22.92
CDY05665	Canola	endoplasmic reticulum, extracellular	4.35	21.1
CDY27590	Canola	cytosol	14.37	12.22
CDX84949	Canola	cytosol	5.1	7.69

Protein Annotations

EnsemblPlants:CDX76472	EnsemblPlantsGene:GSBRNA2T00126885001	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	PFAM:PF00134	ProteinID:CDX76472	ProteinID:CDX76472.1	SEG:seg
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0004EF1CBD	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2	:

Description

BnaA08g09280D

Coordinates

chrLK031807:-:1412087..1415255

Molecular Weight (calculated)

58973.0 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.835

Length

529 amino acids

Sequence
(BLAST)

001: MAGVLGGECS YNESGVSSYS RNSNENQEEG SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQIT IATSIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPA TAQKIKQKEV YEQQKELILS GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSGH HVGSKPISAQ
301: RPSHEHSKSD SHGGSSKATE NQRNENGSGE AGSVITEHTE NQPADKSRPG VEEPAKDKTE RTGAHLPDDS AAHDKSRNVN TSDVPVSQSP KDLKLLRDKV
401: KAKLEAKKLQ GERTRKKDLI DEDDLIEREL EDVELAVDDD KDNQKNSKTN LMGTEQGELL DGNNLVGNAE EGEMVEGVSS VVPSRKRKME SPCEKQLGEG
501: KRQHNDNSEK VEEGFKTSRG GSSQNSHGD

Best Arabidopsis Sequence Match ( AT4G19600.1 )
(BLAST)

001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R

Arabidopsis Description

CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.