Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4A01G199600.1 | Wheat | nucleus | 84.68 | 90.38 |
TraesCS4B01G115800.1 | Wheat | nucleus | 84.23 | 89.9 |
Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 29.5 | 81.37 |
TraesCS2D01G339400.1 | Wheat | nucleus | 75.45 | 67.81 |
TraesCS4D01G113600.1 | Wheat | nucleus | 73.2 | 67.71 |
EES11326 | Sorghum | nucleus | 72.75 | 65.92 |
Zm00001d026030_P014 | Maize | nucleus | 71.62 | 64.9 |
HORVU4Hr1G021220.13 | Barley | cytosol | 59.23 | 59.77 |
EER88086 | Sorghum | nucleus | 63.29 | 59.03 |
Zm00001d027376_P002 | Maize | nucleus, plastid | 70.5 | 56.09 |
GSMUA_Achr6P30140_001 | Banana | nucleus | 61.04 | 53.45 |
GSMUA_Achr6P31620_001 | Banana | cytosol | 56.76 | 49.12 |
AT1G35440.1 | Thale cress | cytosol | 27.25 | 48.99 |
TraesCS5D01G121900.1 | Wheat | nucleus | 59.46 | 47.14 |
CDX71123 | Canola | nucleus | 27.93 | 46.97 |
CDX88692 | Canola | nucleus | 27.03 | 45.45 |
Bra006723.1-P | Field mustard | nucleus | 26.8 | 45.08 |
CDY26395 | Canola | nucleus | 52.7 | 44.49 |
KRH50485 | Soybean | nucleus | 56.53 | 44.27 |
KRG89442 | Soybean | nucleus | 56.53 | 44.19 |
VIT_19s0027g01670.t01 | Wine grape | nucleus | 61.94 | 44.14 |
KRG89447 | Soybean | nucleus | 55.63 | 43.56 |
Bra020954.1-P | Field mustard | nucleus | 51.58 | 43.45 |
AT4G19600.1 | Thale cress | nucleus | 52.93 | 43.44 |
CDY24526 | Canola | cytosol, nucleus, peroxisome | 30.86 | 43.35 |
VIT_00s0125g00270.t01 | Wine grape | nucleus | 57.21 | 43.34 |
CDY09329 | Canola | nucleus | 51.35 | 42.94 |
CDX76472 | Canola | nucleus | 51.13 | 42.91 |
CDY54138 | Canola | cytosol | 30.41 | 42.72 |
Bra031514.1-P | Field mustard | cytosol | 30.41 | 42.72 |
CDX78940 | Canola | nucleus | 38.96 | 42.72 |
Bra013402.1-P | Field mustard | nucleus | 38.96 | 42.72 |
Bra025087.1-P | Field mustard | nucleus | 54.5 | 42.68 |
CDX99359 | Canola | nucleus | 50.9 | 42.32 |
CDX99363 | Canola | nucleus | 38.29 | 42.18 |
Bra021950.1-P | Field mustard | nucleus | 52.93 | 42.04 |
CDX82583 | Canola | nucleus | 53.38 | 41.8 |
CDY39416 | Canola | nucleus | 54.5 | 41.8 |
KRH43745 | Soybean | nucleus | 57.43 | 41.73 |
KRH13708 | Soybean | nucleus | 56.76 | 41.58 |
CDY65933 | Canola | nucleus | 52.93 | 41.37 |
AT5G45190.2 | Thale cress | nucleus | 54.28 | 40.85 |
Solyc10g078180.1.1 | Tomato | nucleus | 56.76 | 40.58 |
AT4G19560.1 | Thale cress | nucleus | 40.99 | 39.57 |
TraesCS3D01G199600.2 | Wheat | nucleus | 23.42 | 29.21 |
TraesCS6D01G332100.1 | Wheat | peroxisome | 13.96 | 24.12 |
TraesCS5D01G289300.2 | Wheat | peroxisome | 13.51 | 23.26 |
TraesCS6D01G310800.2 | Wheat | nucleus | 20.72 | 22.44 |
TraesCS6D01G087700.1 | Wheat | nucleus | 31.31 | 16.63 |
Protein Annotations
EnsemblPlants:TraesCS4D01G113400.1 | EnsemblPlantsGene:TraesCS4D01G113400 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
PANTHER:PTHR10026 | PANTHER:PTHR10026:SF103 | PFAM:PF00134 | PIRSF:PIRSF036580 | SEG:seg | SMART:SM00385 |
SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.9 | MapMan:15.3.2.1.2 | : | : |
Description
No Description!
Coordinates
chr4D:-:93843948..93848079
Molecular Weight (calculated)
50307.5 Da
IEP (calculated)
7.374
GRAVY (calculated)
-0.735
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIMQTSDSS QYGVVENSPY RFPYNKRVED GNLGASWYFS RKEIEENSLS RRDGISLKKE SFLRKSYCTF LQDLGVRLKV PPVTIATAIV FCHRFFLRQS
101: HAKNDRLTVA TVCMFLAGKV EETPIPLKDV ILISYEIIHK KDPGAVARIK QKEVYEQQKK LLLIGERAVL ITLDFDFNVH HPYKPLVEAI KKLKIAQKEL
201: AQVAWSFVND GLCTSLCLQF KPQHIAAGAI FLAAKFLKVK LPADGEKVWW QDFDVTPWQL EEVSNQMMEL YGPPPSQGNN TKSSSASLAD QHAAEKAPGA
301: AEEPPAHKNH PASRQSSLPD HHHPERQNSN QRIVQTETRD GTATSNEGPT MPPSGMDAVE KIADLSEREL KHGVELVAED DEKHDRRQTV PRPPHREDHQ
401: KAAHTTEGTE EGEPSKDSQE CHSKRKEHRS HDHSSERDLK RLRP
101: HAKNDRLTVA TVCMFLAGKV EETPIPLKDV ILISYEIIHK KDPGAVARIK QKEVYEQQKK LLLIGERAVL ITLDFDFNVH HPYKPLVEAI KKLKIAQKEL
201: AQVAWSFVND GLCTSLCLQF KPQHIAAGAI FLAAKFLKVK LPADGEKVWW QDFDVTPWQL EEVSNQMMEL YGPPPSQGNN TKSSSASLAD QHAAEKAPGA
301: AEEPPAHKNH PASRQSSLPD HHHPERQNSN QRIVQTETRD GTATSNEGPT MPPSGMDAVE KIADLSEREL KHGVELVAED DEKHDRRQTV PRPPHREDHQ
401: KAAHTTEGTE EGEPSKDSQE CHSKRKEHRS HDHSSERDLK RLRP
001: MDEALNENAS GSESDASSVA SNLHDDEIIP WFFSREEIER NSPSRRDGID LKTETRLRDS YCTFLEILGE RLKVPQVTIA TAIFFCHRFF LRQSHAKNDR
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
101: QTIATVCMLL AGKVEETPVT LEDVIIASYE RIHKKDLAGA QRKEVYDQQK ELVLIGEELV LSTLNFDLCI SHPYKPLVEA IKKYMVEDAK TQLAQFAWNF
201: VNDCLRTTLC LQYQPHHIAA GAILLAAELP TVDLQSYREV LCQEFDITPC QLEDIRGQIL ELYERIPTSQ ESKVESSGGV AVVHQPISRD MASTEKCPSS
301: DIEGGSSQVN LSQSDDHSVH DGSRSEGIGE VNSESEAQKN LQDHSVGNIM VEKSDDVGVV QLKKDLQLHQ EEVESKQEKD KKSFEKDITK IDLMDEKDLT
401: ESEVEDEINK TMQTGRQIFM KVEDPDDNMT VEHSEIRNAN NSGVDDELVA DTCLINDSDL
Arabidopsis Description
CYCT1-2Cyclin-T1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56YF8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.