Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G096600.1 | Wheat | nucleus | 81.22 | 96.31 |
| TraesCS6B01G125000.1 | Wheat | nucleus | 84.33 | 93.5 |
| HORVU6Hr1G017740.2 | Barley | nucleus | 73.92 | 67.99 |
| Os02t0133000-00 | Rice | extracellular | 29.43 | 55.16 |
| KXG29406 | Sorghum | cytosol | 31.1 | 47.02 |
| Zm00001d015164_P001 | Maize | cytosol | 29.19 | 44.85 |
| GSMUA_Achr3P20770_001 | Banana | nucleus | 20.33 | 40.67 |
| GSMUA_Achr8P18640_001 | Banana | nucleus | 19.62 | 39.61 |
| Bra010927.1-P | Field mustard | nucleus | 14.11 | 36.88 |
| Bra030056.1-P | Field mustard | cytosol | 13.76 | 36.74 |
| CDY11776 | Canola | cytosol | 14.0 | 36.56 |
| CDY03933 | Canola | cytosol | 13.64 | 36.42 |
| CDY60279 | Canola | cytosol | 13.64 | 36.42 |
| CDX90099 | Canola | nucleus | 14.0 | 36.34 |
| AT1G27630.1 | Thale cress | cytosol | 13.64 | 35.96 |
| VIT_18s0001g12980.t01 | Wine grape | nucleus | 18.54 | 35.07 |
| Solyc07g032480.2.1 | Tomato | nucleus | 15.91 | 32.2 |
| TraesCS4D01G113600.1 | Wheat | nucleus | 18.18 | 31.67 |
| PGSC0003DMT400044127 | Potato | nucleus | 16.03 | 31.6 |
| TraesCS4D01G113400.1 | Wheat | nucleus | 16.63 | 31.31 |
| TraesCS2D01G339400.1 | Wheat | nucleus | 18.3 | 30.97 |
| TraesCS3D01G199600.2 | Wheat | nucleus | 11.36 | 26.69 |
| TraesCS5D01G121900.1 | Wheat | nucleus | 17.58 | 26.25 |
| TraesCS6D01G310800.2 | Wheat | nucleus | 11.84 | 24.15 |
| TraesCS6D01G332100.1 | Wheat | peroxisome | 6.7 | 21.79 |
| TraesCS5D01G289300.2 | Wheat | peroxisome | 6.58 | 21.32 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G087700.1 | EnsemblPlantsGene:TraesCS6D01G087700 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| ncoils:Coil | PANTHER:PTHR10026 | PANTHER:PTHR10026:SF76 | PFAM:PF00134 | SEG:seg | SMART:SM00385 |
| SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.9 | : | : | : |
Description
No Description!
Coordinates
chr6D:-:52867754..52871828
Molecular Weight (calculated)
85215.4 Da
IEP (calculated)
10.894
GRAVY (calculated)
-0.569
Length
836 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEGGERGRS WYLSKEEIEE GSPSRKDGMP AAREAQLRSV YSSYIRDVGR RLGVPDITIA TGTVLCHRFY LHQSLVKNEW QTVATACIFL ASKIEDTPCQ
101: LGRVVTVAHE TMYKRKPDAA RRIKQKEVLE KRKDLILMGE ALLLSTIRFD FNIQHPYEPL NLALKNLGIS QKEVKQAAIN LINDTLRTAL VVQFKPHYIA
201: AGALHLASKF HDVTLPFEQG KVWWHQFDVA PKQLQAAIQQ MKQVFNERNQ RPTGPAIGPI PAPAPVEKQQ AVRFPKPALV AKQQTLSLPK PAPVAKSLLK
301: PAPVEEQQAV SFPKPAPVAK QQTVSSQKPA PVEEHQTVSS PKPAPLEEQQ TVSSLKPALV EEQQTVSFPK PAAVEEQQSV SFPKPAPVEK QQTVRSPKPA
401: PXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXAEN QQTASSPKPA PVEKEQTVSS LKPAFVKKEQ TANSPKPAAE
501: KQQTASSPKP APAEKQQTVS SPKPAPVEKQ QIISFPKPVL KYRYSRRGLR NTTAPTVTPT PTLVKKQQKI STPDGPVSHA FSPRGVLNGP TSAPTITPNP
601: MKKQQALSTL DSVLRQAHAS VGGVKRTRSP AQDKTLVKKQ KIISASNSVV RHARPSVVVV RPTGSPARAR TPVKKSQIIS AQDSVPRHTH PSVGGERRLS
701: TAPAPAPASA LARKQPTIST PDSVLRHTDP SRNEDSKPLR MHVDHSLSRT AKDGRLEKPS FQAALNPDHG HHVGSGPKDV NMTRVPNLVG QKRRIQEAAV
801: QPPAPGDRCA GDASRRPQLP SLIVAPPSWK KQKIDV
101: LGRVVTVAHE TMYKRKPDAA RRIKQKEVLE KRKDLILMGE ALLLSTIRFD FNIQHPYEPL NLALKNLGIS QKEVKQAAIN LINDTLRTAL VVQFKPHYIA
201: AGALHLASKF HDVTLPFEQG KVWWHQFDVA PKQLQAAIQQ MKQVFNERNQ RPTGPAIGPI PAPAPVEKQQ AVRFPKPALV AKQQTLSLPK PAPVAKSLLK
301: PAPVEEQQAV SFPKPAPVAK QQTVSSQKPA PVEEHQTVSS PKPAPLEEQQ TVSSLKPALV EEQQTVSFPK PAAVEEQQSV SFPKPAPVEK QQTVRSPKPA
401: PXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXAEN QQTASSPKPA PVEKEQTVSS LKPAFVKKEQ TANSPKPAAE
501: KQQTASSPKP APAEKQQTVS SPKPAPVEKQ QIISFPKPVL KYRYSRRGLR NTTAPTVTPT PTLVKKQQKI STPDGPVSHA FSPRGVLNGP TSAPTITPNP
601: MKKQQALSTL DSVLRQAHAS VGGVKRTRSP AQDKTLVKKQ KIISASNSVV RHARPSVVVV RPTGSPARAR TPVKKSQIIS AQDSVPRHTH PSVGGERRLS
701: TAPAPAPASA LARKQPTIST PDSVLRHTDP SRNEDSKPLR MHVDHSLSRT AKDGRLEKPS FQAALNPDHG HHVGSGPKDV NMTRVPNLVG QKRRIQEAAV
801: QPPAPGDRCA GDASRRPQLP SLIVAPPSWK KQKIDV
001: MGEEHPRKRS RQHFEAEARN VSLFESPQCE TSKWYFSREE IERFSPSRKD GIDLVKESFL RSSYCTFLQR LGMKLHVSQV TISCAMVMCH RFYMRQSHAK
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
101: NDWQTIATSS LFLACKAEDE PCQLSSVVVA SYEIIYEWDP SASIRIHQTE CYHEFKEIIL SGESLLLSTS AFHLDIELPY KPLAAALNRL NAWPDLATAA
201: WNFVHDWIRT TLCLQYKPHV IATATVHLAA TFQNAKVGSR RDWWLEFGVT TKLLKEVIQE MCTLIEVDRR RNMPPPPPPP RRELSWAIPA AVKPVHMARA
301: YPFHSYPLQS YRQAGIW
Arabidopsis Description
CYCT1-3Cyclin-T1-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBC0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.