Factsheet for VIT_18s0001g12980.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0141g00280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27630.1	VIT_07s0141g00280.t01	AT5G10270.1	12678503
AT1G27630.1	VIT_07s0141g00280.t01	AT5G10270.1	20706207
AT1G27630.1	VIT_07s0141g00280.t01	AT5G64960.1	12678503
AT1G27630.1	VIT_07s0141g00280.t01	AT5G64960.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044127	Potato	nucleus	46.83	48.82
Solyc07g032480.2.1	Tomato	nucleus	43.89	46.97
Bra030056.1-P	Field mustard	cytosol	32.58	46.01
CDY03933	Canola	cytosol	32.35	45.69
CDY60279	Canola	cytosol	32.13	45.37
AT1G27630.1	Thale cress	cytosol	31.9	44.48
CDY11776	Canola	cytosol	32.13	44.38
Bra010927.1-P	Field mustard	nucleus	31.67	43.75
CDX90099	Canola	nucleus	31.67	43.48
GSMUA_Achr3P20770_001	Banana	nucleus	38.69	40.91
GSMUA_Achr8P18640_001	Banana	nucleus	35.75	38.16
Os02t0133000-00	Rice	extracellular	34.39	34.08
VIT_00s0125g00270.t01	Wine grape	nucleus	40.27	30.38
VIT_19s0027g01670.t01	Wine grape	nucleus	40.27	28.57
VIT_05s0020g03070.t01	Wine grape	endoplasmic reticulum, extracellular	5.43	27.27
Zm00001d015164_P001	Maize	cytosol	32.81	26.65
KXG29406	Sorghum	cytosol	33.03	26.4
Os02t0438200-01	Rice	nucleus	36.88	25.87
VIT_17s0053g01060.t01	Wine grape	cytosol	6.11	25.71
Zm00001d017392_P009	Maize	cytosol	38.01	25.61
Zm00001d051291_P003	Maize	cytosol	38.91	25.56
VIT_05s0020g03060.t01	Wine grape	nucleus	17.87	25.08
EES07541	Sorghum	plastid	38.91	24.68
TraesCS6A01G096600.1	Wheat	nucleus	35.97	22.55
VIT_00s0360g00050.t01	Wine grape	cytosol	11.99	21.12
TraesCS6B01G125000.1	Wheat	nucleus	35.52	20.82
TraesCS6D01G087700.1	Wheat	nucleus	35.07	18.54
VIT_12s0028g00110.t01	Wine grape	nucleus	21.49	17.43
HORVU6Hr1G017740.2	Barley	nucleus	31.45	15.29

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100266147	wikigene:100266147	MapMan:13.1.1.1.9	ProteinID:CCB45970	ProteinID:CCB45970.1
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N	UniProt:F6H1I9	EMBL:FN595227	GO:GO:0000307
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006464	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016538	GO:GO:0019538	GO:GO:0030234	GO:GO:0045737
GO:GO:0045944	GO:GO:1901409	EntrezGene:LOC100266147	wikigene:LOC100266147	PFAM:PF00134	PIRSF:PIRSF036580
PANTHER:PTHR10026	PANTHER:PTHR10026:SF77	SMART:SM00385	SUPFAM:SSF47954	TIGR:TC56472	UniParc:UPI00015C7B85
ArrayExpress:VIT_18s0001g12980	EnsemblPlantsGene:VIT_18s0001g12980	EnsemblPlants:VIT_18s0001g12980.t01	unigene:Vvi.19737	RefSeq:XP_002281108	RefSeq:XP_002281108.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:11070674..11090733

Molecular Weight (calculated)

50322.7 Da

IEP (calculated)

9.727

GRAVY (calculated)

-0.512

Length

442 amino acids

Sequence
(BLAST)

001: MSEQLRRNPS QHGIARDAIS LYMPEEPQCS ARKWYFSIQE IENHSPSRKD GIDPKKEAQS RKLYCSFLWE LGMKLKVPQV AIATALMLCH RFYLRQSLAK
101: NDWQIIATVS MFLACKAEET PRLLRDVIIM AYEMTYRCDP PALKRIKQRE FFDKQKELIL IGERLLLGTI AFDLNIEHPY KPIVDALKRM GISNNDLVKA
201: AQNLINDWLC TTLCLQYKPH YIAAGSLFLA AKFHKVKLPT EKGKVWWLQF DVAPKQLEEV IQQMRKLLEN KTQAPSPTHA RMTKPTVVLG NTSHYPQPCT
301: ARESSHGTTV GKPLVSKGSL NVAYSDSHCI VKEVIQHPTS GTSSATSVVE DGDGEIHSRT RESERNSSYK FVSIYGKYSK INANPNKENP LERRCSTSSK
401: RSAVARGDEM YSEVCIDGDL RKGREQGYAN SHKKQRRVLL GF

Best Arabidopsis Sequence Match ( AT5G45190.1 )
(BLAST)

001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.