Factsheet for VIT_05s0020g03060.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P00390_001	Banana	mitochondrion	51.11	47.35
VIT_18s0001g12980.t01	Wine grape	nucleus	25.08	17.87
VIT_17s0053g01060.t01	Wine grape	cytosol	5.71	17.14
VIT_00s0360g00050.t01	Wine grape	cytosol	13.33	16.73
VIT_00s0125g00270.t01	Wine grape	nucleus	28.57	15.36
VIT_19s0027g01670.t01	Wine grape	nucleus	29.21	14.77
VIT_05s0020g03070.t01	Wine grape	endoplasmic reticulum, extracellular	3.81	13.64
VIT_12s0028g00110.t01	Wine grape	nucleus	18.41	10.64

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100249379	wikigene:100249379	MapMan:13.1.1.1.9	EMBL:AM433872	ProteinID:CAN71612
ProteinID:CAN71612.1	ProteinID:CBI26220	ProteinID:CBI26220.3	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
UniProt:D7T6U9	EMBL:FN595749	GO:GO:0000307	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006464	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016538	GO:GO:0019538	GO:GO:0030234
GO:GO:0045737	GO:GO:0045944	GO:GO:1901409	EntrezGene:LOC100249379	wikigene:LOC100249379	PFAM:PF00134
PIRSF:PIRSF028758	PANTHER:PTHR10026	PANTHER:PTHR10026:SF67	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0001BE2CB4
ArrayExpress:VIT_05s0020g03060	EnsemblPlantsGene:VIT_05s0020g03060	EnsemblPlants:VIT_05s0020g03060.t01	RefSeq:XP_002277920	RefSeq:XP_002277920.1	SEG:seg

Description

No Description!

Coordinates

chr5:+:4794345..4798018

Molecular Weight (calculated)

36454.1 Da

IEP (calculated)

8.698

GRAVY (calculated)

-0.531

Length

315 amino acids

Sequence
(BLAST)

001: MSFTQTYRAQ GGTFHDNYRP SFIRNKNSNS ANINDNRIRS YNPHDFSRNF RERSKNYNYV NHDAAPSLKR RKFSASAWED TGRRYQQQTT YDNAPSTCNS
101: LVPAPTRPNA NAYTSTSCKR DRSKLEDDDM VFMSRDEIER CSPSRKDGID ALREMHLRYS YCAFLQNLGL RLELPQTTIG TAMVLCHRFF VRRSHACHDR
201: FLIATASLFL AAKSEETQRP LNNVVRASCE ILHKLDLTFL SYLLPVDWFE QYRERVIEAE QMILTTLDFE LTVEHPYVPL TSVLNKLGLS QTVLVNLALH
301: LVSEGIYTRL ACSHL

Best Arabidopsis Sequence Match ( AT4G19600.1 )
(BLAST)

001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R

Arabidopsis Description

CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.