Factsheet for GSMUA_Achr8P00390_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g03060.t01	Wine grape	nucleus	47.35	51.11
OQU86869	Sorghum	cytosol, nucleus, plastid	40.0	42.77
Zm00001d040936_P002	Maize	plastid	40.88	42.38
KRH35545	Soybean	nucleus	44.12	40.32
KRG91263	Soybean	nucleus	44.41	40.27
Solyc09g075760.2.1	Tomato	nucleus	42.94	39.67
KRH27619	Soybean	cytosol	42.35	38.71
TraesCS3D01G199600.2	Wheat	nucleus	38.82	37.08
PGSC0003DMT400081343	Potato	nucleus	43.53	37.0
TraesCS3B01G227700.2	Wheat	nucleus	38.53	36.8
TraesCS3A01G196600.1	Wheat	nucleus	38.24	36.52
HORVU3Hr1G059980.2	Barley	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	38.82	34.38
GSMUA_Achr8P18640_001	Banana	nucleus	24.71	20.29
GSMUA_Achr3P20770_001	Banana	nucleus	23.82	19.38
GSMUA_Achr6P04070_001	Banana	nucleus	27.06	18.93
GSMUA_Achr6P30140_001	Banana	nucleus	25.88	17.36
GSMUA_Achr6P31620_001	Banana	cytosol	25.59	16.96
GSMUA_Achr7P02730_001	Banana	cytosol	12.65	16.35
GSMUA_Achr8P06830_001	Banana	nucleus	17.94	13.71

Protein Annotations

EnsemblPlants:GSMUA_Achr8P00390_001	EnsemblPlants:GSMUA_Achr8T00390_001	EnsemblPlantsGene:GSMUA_Achr8G00390_001	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	PANTHER:PTHR10026	PANTHER:PTHR10026:SF67	PFAM:PF00134	PIRSF:PIRSF028758	SMART:SM00385
SUPFAM:SSF47954	UniParc:UPI000295A4A6	UniProt:M0TLE1	MapMan:13.1.1.1.9	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_20.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr8G00390_001]

Coordinates

chr8:+:333553..342990

Molecular Weight (calculated)

38482.8 Da

IEP (calculated)

8.536

GRAVY (calculated)

-0.403

Length

340 amino acids

Sequence
(BLAST)

001: MPVSQPITGG YRHRYASNRG AVGPPYGRII SIPGISNPAA SSDPCRELPF RRRHQDFVLN DPYAAPGGPP PLKRRRMRSD GFTWDGRAGG NIASTSSSSF
101: LQPPRRGVDA RYGPPSAGQN HAPVRSEGEN AAFVSRDEIE RCSPSRKDGI DPLLETQLRY SYCSYLQNLG MRLELPQTTI GTAMVLCHRF FFRRSHACHD
201: RFMIATAALF LAAKSEETPC VLNSMLRASC ETSQELELSY YPYLHHKVND WFEQYRERVI ETEQKILTTL DFELEVEHPY VPLASVLNKL GLSQSVLLTV
301: AWNFVSEGYG SWLCYLPIAF AMSTHLFHLE WKVYNTLKNR

Best Arabidopsis Sequence Match ( AT4G19600.1 )
(BLAST)

001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R

Arabidopsis Description

CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.