Factsheet for GSMUA_Achr8P18640_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P20770_001	Banana	nucleus	64.25	63.64
Bra030056.1-P	Field mustard	cytosol	30.68	40.58
CDY03933	Canola	cytosol	30.68	40.58
AT1G27630.1	Thale cress	cytosol	30.68	40.06
CDY60279	Canola	cytosol	30.19	39.94
Solyc07g032480.2.1	Tomato	nucleus	38.65	38.74
PGSC0003DMT400044127	Potato	nucleus	39.61	38.68
Bra010927.1-P	Field mustard	nucleus	29.47	38.12
CDY11776	Canola	cytosol	29.47	38.12
CDX90099	Canola	nucleus	29.47	37.89
Os02t0133000-00	Rice	extracellular	39.61	36.77
VIT_18s0001g12980.t01	Wine grape	nucleus	38.16	35.75
GSMUA_Achr6P30140_001	Banana	nucleus	38.65	31.56
GSMUA_Achr6P04070_001	Banana	nucleus	35.75	30.45
GSMUA_Achr6P31620_001	Banana	cytosol	37.2	30.02
Os02t0438200-01	Rice	nucleus	45.65	30.0
Zm00001d017392_P009	Maize	cytosol	47.34	29.88
Zm00001d051291_P003	Maize	cytosol	47.83	29.42
KXG29406	Sorghum	cytosol	39.13	29.29
EES07541	Sorghum	plastid	47.34	28.12
Zm00001d015164_P001	Maize	cytosol	36.72	27.94
GSMUA_Achr8P00390_001	Banana	mitochondrion	20.29	24.71
TraesCS6A01G096600.1	Wheat	nucleus	40.34	23.69
GSMUA_Achr7P02730_001	Banana	cytosol	14.01	22.05
TraesCS6B01G125000.1	Wheat	nucleus	39.86	21.88
GSMUA_Achr8P06830_001	Banana	nucleus	21.5	20.0
TraesCS6D01G087700.1	Wheat	nucleus	39.61	19.62
HORVU6Hr1G017740.2	Barley	nucleus	35.02	15.95

Protein Annotations

EnsemblPlants:GSMUA_Achr8P18640_001	EnsemblPlants:GSMUA_Achr8T18640_001	EnsemblPlantsGene:GSMUA_Achr8G18640_001	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N	PANTHER:PTHR10026	PANTHER:PTHR10026:SF102
PFAM:PF00134	SMART:SM00385	SUPFAM:SSF47954	TMHMM:TMhelix	UniParc:UPI000294CB1A	UniProt:M0TRL7
MapMan:13.1.1.1.9	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G18640_001]

Coordinates

chr8:+:23465296..23472256

Molecular Weight (calculated)

47965.8 Da

IEP (calculated)

8.462

GRAVY (calculated)

-0.240

Length

414 amino acids

Sequence
(BLAST)

001: MGEPLEAFID GNCSVEDELH HRYWSSWYFS KEEIEKNSPS RKDGIDLRKE SQLRMSYCSF LRDLGIRLGL PQVTIATAIM FCHRFYLHQS HAKNEWQIVA
101: TVCMFLASKA DETPCGLDRI VVVACETMHK RDPAAARRVR QKDFFEKQKA LILIGERLLL STLRFDFNIQ HPYRPLLNAL KKLGITQKEV RQVAWNYVND
201: WLWTTLCLQY KPHYIAAGSL FLAAKLHNVR LPSEKGDYVW WHEFDINPQQ LEVVIQLMKQ LLGFNRRTSV IQPSIATNKD VYSSPDSVLN RPESSRSSSI
301: QKPDVDITTH KPVDSTDHDL TNISIAEKEK SSTECRTEQR QTREVVFKTQ TWIIQFAKEE LISALIYNWS VIFIVPSCLV GKPQSVLIYL FIFHCYYMLL
401: ASTAAILSKS YRSC

Best Arabidopsis Sequence Match ( AT4G19600.1 )
(BLAST)

001: MAGVLAGDCS FGESGVSSYS RNSNEKQDEV ARWYFGRKEI EENSPSRLDS IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFIRQSHARN
101: DRRTIATVCM FLAGKVEETP RPLKDVIVVS YEIIHKKDPT TAQKIKQKEV YEQQKELILN GEKIVLSTLG FDFNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQVSEV ESSVGGGSAH HVGSRPSARL
301: THEHSNSDNL GGSTKATQNR SNDNGSGEAG SVITEQKGER DTETKDSMHT ESHPAHKSRS GVEAPGEDKI EKAGAHFPED DKSRIVGTAD VTVSQSPKDI
401: KMFRDKVKAK LEAKKVQGEK TRKKDLVDED DLIERELEDV ELAVEDDKDI QNKSSMGTEH GEILDGNNLV VNTEEGEMID DVSSTMPSRK RKMESPCEKQ
501: LGEGKRRHDN SENVEEGQKT NPGGSSHSYG DREPRRHSQE R

Arabidopsis Description

CYCT1-4Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.