Factsheet for GSMUA_Achr6P04070_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G35440.1	Thale cress	cytosol	25.51	50.2
GSMUA_Achr6P30140_001	Banana	nucleus	50.21	48.13
GSMUA_Achr6P31620_001	Banana	cytosol	50.62	47.95
CDX88692	Canola	nucleus	25.72	47.35
Bra006723.1-P	Field mustard	nucleus	25.51	46.97
CDY26395	Canola	nucleus	50.62	46.77
CDX71123	Canola	nucleus	25.1	46.21
AT4G19600.1	Thale cress	nucleus	51.44	46.21
Bra020954.1-P	Field mustard	nucleus	50.0	46.11
CDX76472	Canola	nucleus	50.0	45.94
CDY09329	Canola	nucleus	50.0	45.76
KRG89442	Soybean	nucleus	53.29	45.6
KRH50485	Soybean	nucleus	53.09	45.5
KRG89447	Soybean	nucleus	52.26	44.8
CDX99359	Canola	nucleus	49.18	44.76
CDY54138	Canola	cytosol	29.01	44.62
Bra021950.1-P	Field mustard	nucleus	51.23	44.54
CDY24526	Canola	cytosol, nucleus, peroxisome	28.81	44.3
Bra031514.1-P	Field mustard	cytosol	28.4	43.67
CDX82583	Canola	nucleus	50.82	43.56
Bra025087.1-P	Field mustard	nucleus	50.62	43.39
CDY65933	Canola	nucleus	50.62	43.31
VIT_00s0125g00270.t01	Wine grape	nucleus	52.06	43.17
VIT_19s0027g01670.t01	Wine grape	nucleus	55.14	43.02
AT5G45190.2	Thale cress	nucleus	52.06	42.88
CDY39416	Canola	nucleus	50.62	42.49
KRH13708	Soybean	nucleus	52.06	41.75
KRH43745	Soybean	nucleus	52.26	41.57
CDX99363	Canola	nucleus	34.16	41.19
Solyc10g078180.1.1	Tomato	nucleus	52.26	40.9
CDX78940	Canola	nucleus	33.95	40.74
Bra013402.1-P	Field mustard	nucleus	33.95	40.74
AT4G19560.1	Thale cress	nucleus	37.24	39.35
GSMUA_Achr3P20770_001	Banana	nucleus	31.89	37.08
GSMUA_Achr8P18640_001	Banana	nucleus	30.45	35.75
GSMUA_Achr8P00390_001	Banana	mitochondrion	18.93	27.06
GSMUA_Achr7P02730_001	Banana	cytosol	13.99	25.86
GSMUA_Achr8P06830_001	Banana	nucleus	19.14	20.9

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.9	MapMan:15.3.2.1.2	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSMUA_Achr6G04070_001
EnsemblPlants:GSMUA_Achr6P04070_001	EnsemblPlants:GSMUA_Achr6T04070_001	UniProt:M0T405	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF036580
PANTHER:PTHR10026	PANTHER:PTHR10026:SF103	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0002969393	SEG:seg

Description

Cyclin-T1-4 [Source:GMGC_GENE;Acc:GSMUA_Achr6G04070_001]

Coordinates

chr6:+:2796424..2805833

Molecular Weight (calculated)

54694.9 Da

IEP (calculated)

8.392

GRAVY (calculated)

-0.651

Length

486 amino acids

Sequence
(BLAST)

001: MVKRGHSSYD KLNEPNCFGS RWYFSRKEIE ENSPSRRDGI ELKKEKNLRN SYCSFLQDLG MRLKLPQVTI ATAIVFCHRF FLRQSHAKND RRIIAIACLF
101: LAGKVEDTSR PLKDVILVSC EIIYKKEPSA VQKIKQKEVY EQQKELIVLG ERVVLATLGF DLNVLHPYKP LVEAIKKFKV STQNSLAQAA WNFVNDGLRT
201: SLCLQYKPHH IAAGAVCLAA KFLKVKLPSD VEKGWWQEFD VTPRQLEDVS NQMLELYEQN RSGQSSHSTE VEGNIGGNNN EPIVTTSSVG RSSVSTNGHA
301: QDASAGCKSE IWDHNMGAEG NDCSSNEFDK SSDCRENTLE TSCCSKPDLP LGSAVVNERD KVKVDKELMD AGSSTKSLSI SRQISDFGET AKIFFPPDSI
401: NRCKTKAALE KQRRLQNNGG QKRKSMDEHD DLITRDGCEL PCKLASQRAM VTGREPEYMQ QCHNRHQSCD TTGSRGNRLE KLHNKP

Best Arabidopsis Sequence Match ( AT5G45190.1 )
(BLAST)

001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS

Arabidopsis Description

Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.