Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038497_P001 | Maize | cytosol, extracellular, peroxisome | 27.88 | 88.82 |
| Zm00001d027790_P001 | Maize | cytosol | 36.65 | 69.63 |
| GSMUA_Achr6P30140_001 | Banana | nucleus | 67.06 | 67.85 |
| TraesCS4A01G199300.1 | Wheat | nucleus | 58.48 | 63.42 |
| HORVU2Hr1G083340.2 | Barley | nucleus | 60.04 | 63.37 |
| EES11326 | Sorghum | nucleus | 60.43 | 63.27 |
| Zm00001d026030_P014 | Maize | nucleus | 60.43 | 63.27 |
| TraesCS2B01G358600.1 | Wheat | nucleus | 59.84 | 63.04 |
| TraesCS2A01G323500.1 | Wheat | nucleus | 59.84 | 63.04 |
| TraesCS4D01G113600.1 | Wheat | nucleus | 58.87 | 62.92 |
| TraesCS2D01G339400.1 | Wheat | nucleus | 60.23 | 62.55 |
| TraesCS4B01G116000.1 | Wheat | nucleus | 58.09 | 62.21 |
| HORVU4Hr1G021250.6 | Barley | nucleus | 58.09 | 62.21 |
| HORVU0Hr1G007890.2 | Barley | cytosol, nucleus | 45.22 | 60.89 |
| Zm00001d020158_P001 | Maize | nucleus | 48.54 | 60.58 |
| EER88086 | Sorghum | nucleus | 55.17 | 59.45 |
| TraesCS4D01G113400.1 | Wheat | nucleus | 49.12 | 56.76 |
| TraesCS4B01G115800.1 | Wheat | nucleus | 45.61 | 56.25 |
| TraesCS4A01G199600.1 | Wheat | nucleus | 45.42 | 56.01 |
| Zm00001d027376_P002 | Maize | nucleus, plastid | 60.23 | 55.38 |
| Os12t0485400-01 | Rice | nucleus | 57.12 | 53.96 |
| TraesCS5A01G103900.2 | Wheat | nucleus | 55.17 | 53.8 |
| HORVU5Hr1G038970.16 | Barley | nucleus | 56.14 | 52.84 |
| TraesCS5D01G121900.1 | Wheat | nucleus | 56.53 | 51.79 |
| GSMUA_Achr6P04070_001 | Banana | nucleus | 47.95 | 50.62 |
| TraesCS5B01G112100.2 | Wheat | nucleus | 57.12 | 50.34 |
| HORVU4Hr1G021220.13 | Barley | cytosol | 39.57 | 46.14 |
| OQU93178 | Sorghum | nucleus | 51.27 | 45.03 |
| KXG23456 | Sorghum | nucleus | 47.37 | 41.33 |
| GSMUA_Achr3P20770_001 | Banana | nucleus | 32.94 | 40.43 |
| GSMUA_Achr8P18640_001 | Banana | nucleus | 30.02 | 37.2 |
| GSMUA_Achr7P02730_001 | Banana | cytosol | 14.81 | 28.9 |
| GSMUA_Achr8P00390_001 | Banana | mitochondrion | 16.96 | 25.59 |
| GSMUA_Achr8P06830_001 | Banana | nucleus | 19.1 | 22.02 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P31620_001 | EnsemblPlants:GSMUA_Achr6T31620_001 | EnsemblPlantsGene:GSMUA_Achr6G31620_001 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf |
| InterPro:Cyclin_N | PANTHER:PTHR10026 | PANTHER:PTHR10026:SF103 | PFAM:PF00134 | SMART:SM00385 | SUPFAM:SSF47954 |
| UniParc:UPI000295B7D4 | UniProt:M0TBV7 | MapMan:13.1.1.1.9 | MapMan:15.3.2.1.2 | : | : |
Description
Cyclin-T1-3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G31620_001]
Coordinates
chr6:+:31355723..31364503
Molecular Weight (calculated)
58996.6 Da
IEP (calculated)
8.908
GRAVY (calculated)
-0.582
Length
513 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGDSPRTFS YDRDEEVKLP GASWYLSRKD IEDNSPSRRD GTDLKKETYL RKSYCTFLQD LGMRLKVPQV TIATAIVFSH RFFLRQSHAK NDRRTIATVC
101: MFLAGKVEET PRPLKDVILV SYEIIHKKDP TAVQRIKQRE VYEQQKELIL LGERLVLATL GFDLNVQHPY KPLVEAIKKF KIAQNALAQV AWNFVNDGLR
201: TSLCLQFKSH HIAAGAIFLA AKFLKVKLPS DGEKVWWQEF DVTPRQLEEI SNQMLELYEQ NRPALSSQGN ETEGSSASGV SHRAPANTPV DVEEPTTQSG
301: YSYDHWHHEP LSNPDTMGST FHHRPEQPGE ELVSDGTEGM VETREKNSIY IEGSKVDSPM VDAMKKIDKD KVKAALEKRR KSRADNAKKV DLMDDDDLIE
401: RELEHGVELA VEDERNKQTG RSWRQRMLKK GSYQWIVRVS IHLSLATRKE KQRLAKTCVD WNVARGIIKG SGRKIRCYMQ CKDMWLNGFF FFSKEELWLN
501: GVLIQFNLLK CFI
101: MFLAGKVEET PRPLKDVILV SYEIIHKKDP TAVQRIKQRE VYEQQKELIL LGERLVLATL GFDLNVQHPY KPLVEAIKKF KIAQNALAQV AWNFVNDGLR
201: TSLCLQFKSH HIAAGAIFLA AKFLKVKLPS DGEKVWWQEF DVTPRQLEEI SNQMLELYEQ NRPALSSQGN ETEGSSASGV SHRAPANTPV DVEEPTTQSG
301: YSYDHWHHEP LSNPDTMGST FHHRPEQPGE ELVSDGTEGM VETREKNSIY IEGSKVDSPM VDAMKKIDKD KVKAALEKRR KSRADNAKKV DLMDDDDLIE
401: RELEHGVELA VEDERNKQTG RSWRQRMLKK GSYQWIVRVS IHLSLATRKE KQRLAKTCVD WNVARGIIKG SGRKIRCYMQ CKDMWLNGFF FFSKEELWLN
501: GVLIQFNLLK CFI
001: MAGVLAGECS YSESGVSSHS RNSHEKQEEV SRWYFGRKEI EENSPSRLDG IDLKKETYLR KSYCTFLQDL GMRLKVPQVT IATAIIFCHR FFFRQSHAKN
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS
101: DRRTIATVCM FLAGKVEETP RPLKDVIFVS YEIINKKDPG ASQKIKQKEV YEQQKELILN GEKIVLSTLG FDLNVYHPYK PLVEAIKKFK VAQNALAQVA
201: WNFVNDGLRT SLCLQFKPHH IAAGAIFLAA KFLKVKLPSD GEKVWWQEFD VTPRQLEDVS NQMLELYEQN RVPASQGSEV ESSVGGGSAQ RPGSRNAVST
301: DEHVGSRQTS SVRSTHEQSN SDNHGGSSKG VLNQNNENGG GEAANVSVDN KEEIERETKE SSLHLESHPA HKDNVREAPH NSRPLVEGPG KDNSEREGGE
401: LQDDGAVHKS RNVDVGDALI SQSPKDLKLL RDKVKAKREK AKKLLGERTR KKDLMDEDDL IERELEDVQL AVEDEKTKER KVQSRPKAEN SDLMGTEHGE
501: ILDVKGEVKN TEEGEMVNNN VSPMMHSRKR KMGSPPEKQS EGKRRHNSEN GEESHKTSRG SSHHGDREHR RHSQENNHS
Arabidopsis Description
Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.